G681222


Basic Information

Item Value
gene id G681222
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5433842 ~ 5439315 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU802156
AAACAATTCAGTTAAGATACAGTTAAGAATCTGAAAAATTCTGTTTTTCCCAATAAAAACTGTCAAATCCACTCAAATATTTCTCTTCATATTCCCCATAGAAATGAATGAGCAAGTTAAGACAGATTTTAAGAAATACATAAGCATTATAATGAGTAAATTACTGGAACTGTCCAAAGTTCCAAAACTTGGAACTGGAACCTTCCCAAGTAAGAAGTAAATGTGAAATACTGCACAGAAGCAGCACCTGAGCTCTGGAGAGATGCAAGCCCAGTGTGTACATGATCTCCTCCAAGTCCTTCTCCTGCAGGTAGCCACAGTGACTCTGGTCGAAGTACACAAAGGCCATCAACAGATCCTTGTTAAACGTCACCATCTGCTTTTTCTTCTCATCTTTATCTTTAGATGATCTTTCTTTGGATTTCCGGTCATCTCGACGATCGTCTCTTCTGTCCCTGCCATTGGAGTCTTCATCATCTTTATCATCGTCATCATAGTCGTCTGCTTCTTCTGCCTCCAAGGGGTCATATTCATCAGCGTTGTTGTTGCTGCTGCCATCTTCGTTATCATCATCATCTTTGGATTCTTCTCTCTTAATACCTCTCTCTTTCTCCTCATCCTTCCTCTTCTCATCCTCCTCTCGCATTCTCTTTGTGACCGGCTCTCCATTTTCTTCATCCTTCTCCTTCTTTACATCTCTCCGTTCTGCCTCTTTTTTAGCTTTCTCTTTTTTATCTTTCCTCTCATCCTTGCCCGGAAGAGAAGCGAGTGCTTTGTAGATCCTGTAGCCGAAGTCTCGTTGAAGCATCTCATTGAACAATTCAGCAAACAAAGACACCTCAAAGGAGTGCTCTTTATTATCCTCCAGTCTGTAGTCTAGCAGTACACTCAAGGACATGATGCTGCAGTCAAATTTGCCATTCTTGGCAGCCCAGTTGGGGTGGACGATAATGGTGGGCTCATCTGGCAGAACATAACGTCTCTCCCTGCGCTGACGTTCTTGCTCCTCCTGACGCTTTCGCTCCTCTTCCTCTCGGTCATCCTCCAGTCTGCAGGACTCATCCTCCTCCACGCTAGGAGGTTCAGGTTTCTCAGGCTCCTTGGACTCCTCCACCTGCTCCTCCACCTTCAGCTGTTTGGTGAGGCGAGCGATCAGCTGTGATTTCAGCCCTTTAGAGCTCAGTGTACGACTCTCCAACTCCTTTCGCAAGTCATTGACCTTCATGGATTTCGGATCAAGCTTCGACCAGTGAGTTGGCGTAGTGACTTCTTTTGAATCATCTTCGTCTTTATCGTCCTCCTCCTGTTCTCCATCAGCCTCCTTCCGTTCAGCCAAGAGTTTCTCTGCCAGCTGCTCCTTGAGTCCACGGGACAGCCCCTCCCACTCTGAGCGGGTAGGAAGACAATGCCAAACATCCGGGAGAAATAAAACCACTGTCTCCACATGTGCGGGGACTGTCCGCCCTTTGTGAGTCTCCTCAGGGCGGTGATAGCGTATCTCTGCAAAACGATACCTGTCGCAAAGGAAGAAGCGCGTTGGAAAGAAACATTCTGTGAGACATCACCCATTTCCCCCAACACACACACACACACAGAAAGCTGCGATCCCCTCGACCCCCCGAATGAGACGCATATGAAAATACAGTCTGCGGAACTCCACGGGGGGTTTCTCAGGATGAACGGCAGCCACGCATCAGGGAGGTCGACAGACAATATCGAC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU802156 True 1720 lncRNA 0.47 8 5433842 5439315

Neighbor

gene id symbol gene type direction distance location
CI01180000_05361478_05362402 NA coding upstream 71336 5361299 ~ 5362506 (+)
CI01180000_05307085_05313251 MAT1A coding upstream 120453 5306869 ~ 5313389 (+)
CI01180000_05276728_05284341 SFXN3 coding upstream 149275 5276418 ~ 5284567 (+)
CI01180000_05236666_05242597 LZTS2A, LZTS2 coding upstream 191094 5235723 ~ 5242748 (+)
CI01180000_05200856_05203377 NA coding upstream 230427 5200697 ~ 5203415 (+)
CI01180000_05460865_05464029 NA coding downstream 21550 5460865 ~ 5464533 (+)
CI01180000_05552106_05558265 SLC25A16 coding downstream 112560 5551875 ~ 5559075 (+)
CI01180000_05566677_05569815 ALOX5, ALOX5A coding downstream 127362 5566677 ~ 5569854 (+)
CI01180000_05587131_05604001 FAM21C coding downstream 147732 5587047 ~ 5605024 (+)
CI01180000_05605783_05625064 ZFAND4 coding downstream 166468 5605783 ~ 5626277 (+)
G681379 NA non-coding upstream 51191 5374429 ~ 5382651 (+)
G681373 NA non-coding upstream 73896 5359139 ~ 5359946 (+)
G681353 NA non-coding upstream 129012 5304622 ~ 5304830 (+)
G681350 NA non-coding upstream 132669 5300942 ~ 5301173 (+)
G681346 NA non-coding upstream 162401 5270751 ~ 5271441 (+)
G681400 NA non-coding downstream 59898 5499213 ~ 5499417 (+)
G681227 NA non-coding downstream 60349 5499664 ~ 5502130 (+)
G681405 NA non-coding downstream 80922 5520237 ~ 5521359 (+)
G681269 NA non-coding downstream 87642 5526957 ~ 5532092 (+)
G681425 NA non-coding downstream 143785 5583100 ~ 5583367 (+)
G681268 NA other upstream 60080 5370410 ~ 5373762 (+)
G681137 NA other upstream 648211 4783305 ~ 4785631 (+)
G680736 NA other upstream 1649401 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 1861445 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 2738406 2689271 ~ 2693221 (+)
G681592 NA other downstream 1033720 6471995 ~ 6478999 (+)
G681686 NA other downstream 1193593 6632908 ~ 6634989 (+)
G681667 NA other downstream 1216531 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1963832 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 2224108 7694529 ~ 7695667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location