G681227


Basic Information

Item Value
gene id G681227
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5499664 ~ 5502130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU802161
ATTTCAATGTGTTTTTGAAGTTTTTAGTATTTTCTTAGACTTATGCATTTAGTATAAGGACTGAAAAATCATTTAAAAATGTGCAAATGGAAAAGCCTCACTCTTCGCATGTACTGTACAACTACTGTGCATTTTATTTTCTAAAAGAAAAATCTCAAAAGCTGGTGTTTTCTTTCCTTGACAAATCATTTCAAGTCACATAATAAACAAGTCTTCAAGTCATAATATGTTCTTGTTTGTTTTGAAGAGGTTTAAAATTCCACATTATACAACAACAGTGCCCGTGAAGGCTTACATTCATACTTAAAGGTGAAGTGTGTAATTTTTTTGATGCTAAAATAAGTTGAATATGTGACAAATAATGCTAAAATAAGCAAATGGTAGGCTGAATTCCCCCAAAAATGAAACATCTTTGGGCTATATGAACACATTACTCTGCTGTTTGAGCACCACAACCAGCCCAACACAACAACTTTGGATCAACCAATCTATCTGGGAGATTGATGGGGAAACCTGTTTGAAAACAGTGATTATTTATGCATTTCTGTTTGGTGACACTAGTGGCGCAGGAATTACACACTTCAGCTTTCATTCAACATACACAGAAGAGAATTGTCAAACTGATAATATACATTAAGATGTTTTAAGGGGAACCACTTTTCCATTTCACAAAATAGAAACAAAAGTAAATAAAAATTTTGGAGAATTTAATTGGAAGACAATGCAAGAGTCCTAGAAGCTTATGTCCAAAGTTACACAGAGAGACCTGAGAAAAGAGGGGAAAAAATACAACAAAGAAGGCGGGAAAAAAAAAAACATGCAAGAGACATCTAATGTGAATATATTAACTTGAAAAGGAATGTAACAAGATGCATTTCTTTTGGAACATGTTTTCACTATAGACTGTTGCTATGAGGGCCATGTTCAATCATCTGAACTAAAAAAAAAACATCCTATGAGCCAAATATAAAATATGTTAGATAAATCTTATGTGGAAAATGCAGGTTTTGAACAGCAACATGAAAACCAACCCATCATTCATGTAAAACAATAGCTTGGAAAACAATAGCTTAGAAAAATGCATAAAATCAGTGAGCTTTGAAACATATTGCATTGGTAATTCCCTTAGGCTATTTGATGTTCATAGTACTGACATTTCAAAGTCAGTCAATTACCATCAGGGGACTGTGAGGTCATAGTATTATCTGTGCCACATAAAGTCAAGAGGAAAAACACTCGATAACATAGCATGATCTAATGATGTTCAAGCTGAGTAAAACATTCAGCACCCCTAAAATGAAAGATCCAACTAGTGCAGCACCTACATGTGATTTGTCAATGCCAGGGGACTCTGGTACTATGAATAAGCACCACTGAATGAGCACTAAAAGCCTTTCCCTGAGCTACAAACCCAGGCTTTTTTTCTTACACATGATGGTTTGACACAAAAACAACAGTTTAATTGTTCAGCAAAAATATATTTAATTGAAGAGACAGTAGCGTGAACGTACAAATGCCACTCTGTGACTTCAAGTTCCCCAAAACATTGGGTTATTGTTGAGCTTTTCTATCCATGTTGCAGCTAGAGTACTAGTTAAAACAGGTTTTCATAGATAATATGTAAAATTTCTCACAACCTATTTGAAAAGATGTTGTATCAAGTGCTGAAGTAAGAACAGCATTTTGGGTGTACAATGGTTTTGAACACTGACGTACACTCTTTAGCACCTTGAAGAAATTAAAAAGACATTTTTTAGCCGCATGTTCATTTTAAAACTCATGTAAGAGTAATGTAAACCTTTTGATTAAGCCAGTATTTTGACTAGGCCTCTGGATACACATGCAATTACGAAGTCATTTGTTTTAAAGTAGATCTTCTTATTCAACGCACCTAAATAAAACTGAACAAACTTTTATGTGTACAAAAATGCACCAACACTGATCCACCCCACCCCCCGCACCAAAAAAAGTGATTGATTTAAAATAAAAATGCACTATGCAGCAATAAAAACATACGAAATGACATCTCAACAGGTGTCATGGGATCTCTTTAAAAGCACCAGTGAAAACATACAGTAAATTTGTTTGAATATAACTTAACACGCTTGAATTGTATAAAATGATTAAGCTGTTTTCAAGTCATGTTTCAACCTCTTTGGGAGTTACAAAAAAACTCAAAAATTGGGACCAAATAATATAAACTTTTACACAAGTGCCAGAAATTAACCAGTTTAGACATGTTGCCAAAATGCAGCATAAAACCTTCCATGATTATTGCTTAAATATGCAAAGTTTCATAATCACCAAACACATGCTGACTGTAGATACTTGATGATGGAAAAACCAAATGTACATATTGGACACTTCAACGGTCAAGTTGGTCTGAAGATACAAAGTGCTTTTTTAAAGGGCTAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACCCTCAAGTGGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU802161 True 2467 lncRNA 0.34 1 5499664 5502130

Neighbor

gene id symbol gene type direction distance location
CI01180000_05460865_05464029 NA coding upstream 35131 5460865 ~ 5464533 (+)
CI01180000_05361478_05362402 NA coding upstream 137158 5361299 ~ 5362506 (+)
CI01180000_05307085_05313251 MAT1A coding upstream 186275 5306869 ~ 5313389 (+)
CI01180000_05276728_05284341 SFXN3 coding upstream 215097 5276418 ~ 5284567 (+)
CI01180000_05236666_05242597 LZTS2A, LZTS2 coding upstream 256916 5235723 ~ 5242748 (+)
CI01180000_05552106_05558265 SLC25A16 coding downstream 49745 5551875 ~ 5559075 (+)
CI01180000_05566677_05569815 ALOX5, ALOX5A coding downstream 64547 5566677 ~ 5569854 (+)
CI01180000_05587131_05604001 FAM21C coding downstream 84917 5587047 ~ 5605024 (+)
CI01180000_05605783_05625064 ZFAND4 coding downstream 103653 5605783 ~ 5626277 (+)
CI01180000_05721160_05745421 MARCH8 coding downstream 218970 5721100 ~ 5745673 (+)
G681400 NA non-coding upstream 247 5499213 ~ 5499417 (+)
G681222 NA non-coding upstream 60349 5433842 ~ 5439315 (+)
G681379 NA non-coding upstream 117013 5374429 ~ 5382651 (+)
G681373 NA non-coding upstream 139718 5359139 ~ 5359946 (+)
G681353 NA non-coding upstream 194834 5304622 ~ 5304830 (+)
G681405 NA non-coding downstream 18107 5520237 ~ 5521359 (+)
G681269 NA non-coding downstream 24827 5526957 ~ 5532092 (+)
G681425 NA non-coding downstream 80970 5583100 ~ 5583367 (+)
G681426 NA non-coding downstream 81387 5583517 ~ 5583720 (+)
G681268 NA other upstream 125902 5370410 ~ 5373762 (+)
G681137 NA other upstream 714033 4783305 ~ 4785631 (+)
G680736 NA other upstream 1715223 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 1927267 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 2804228 2689271 ~ 2693221 (+)
G681592 NA other downstream 970905 6471995 ~ 6478999 (+)
G681686 NA other downstream 1130778 6632908 ~ 6634989 (+)
G681667 NA other downstream 1153716 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1901017 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 2161293 7694529 ~ 7695667 (+)

Expression


Co-expression Network