XLOC_014577 (cacng7a)


Basic Information

Item Value
gene id XLOC_014577
gene name cacng7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 9840771 ~ 9882821 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028814
GTACGAGTGAAAGAGTCTCTCCTCTGTCACTCCTTTCCCATTCAGCCAAATCACCGCAGTGCCGAAAGACTGAGAGcgaggaggagaaagagagagagtgagagaaaacacgcgtgtgtgtgtgttagagagagtgacggggagagagagagagaggagaaaacTGCAAAATCTGTGAAGGTTTCCTGGCGTCCGCTGGTTCCACTCGACGGCCGTGCAGCGCTGACTGGAGGATGAGTTCATTTAGCACCAGGGCGCTGACGCTGCTGTCGTCGGTGTTCGGGGCGTGTGGTCTGCTCCTGGTGGGAGTGGCCGTTTCCACAGATTACTGGCTGTTAATGGAGGAAGGCATCATTCTGCAGCAGAACCAGACCACAGAGGTCAAGATGGCTCTGCATTCTGGACTCTGGAGGGTCTGTTTTGTGGCTGGGCCAGAGAAGGGGAGATGTGTGGCATCTGAATACTTCACTGAGCCAGAAATAGAGATCACTACTGAGAACACAGCCAATATACTAAAAATGGTCAGGACCGCCACCCCATTCCCTATGGTCTCACTTCTTTTTGTCTTCACGGCTTTTGTCATAAGCAACATCGGCCACATCCGTCCCCAGCGTACCATTCTGGCCTTCGTCTCTGGAATCTTTTTCATCTTATCAGGTTTGAGTTTAGTGGTTGGTCTGGTTTTGTATATCTCCAGTATCAATGATGAAGTGATGAACAGGCCTCGGGAGCCAGAGCAGTTCTTTCATTACCATTACGGCTGGTCGTTTGCCTTTGCTGCCAGCTCCTTCCTGCTCAAAGAGGGTGCTGGGGTCATGTCAGTCTATCTCTTCATGAAACGTTACGCTGAGGAAGAGATGTACCGACCCCACCCTGCACTGTATCGCCCTCGTCTGTCTGAATGCAGTGACTACAGTGGCCAGTACCTGCACCCCGACTCGTGGCCTCCTCCTCAACGTGGACGCAGCGGCTCTGAGGTGTCCAGCGACATCTCCATTCAGCTCAACCAGACCCCCCTGCCTCCTCAAACGAAAGGCAGCGGGCCATCTAATCCGCCCTCTTCCTCGGGCCCCTCCTCCGGGGCCAGTTATCACCTCCCACctgcttcctcctcctcctcctcttcctatCCTCACACCATCCACTCTTCCCATTCCAGCAGCCACGTCCCTCAGTCTCTCCCAATGGCCGCGCCCCCATCTGCAGTCCCGCCTCCTCGTTATCATGCGCATATGCGTATGAGCGCATCCCCGTGTTAGAGCTCCTCCGCATTCAATACCTAAACAACACAAATATGAGTATAACCTTAGGAAAGAGGGTAAAACTCCAGAGACAATGGCAGAAAAATGGAGAAAAGGGTGCTAAGTTGCAAAGAGGTAGACAATGAAGCATTTTACTCGCAATTCTGTGCCTGAATAATGTTTTAACAGATTCTCAGAGTGAGATTTAACAAAGGACTGAAGGAATTGGGATTTATACATATAGAACGAATGTATGGAGGAGgatgaaaacagaaaaaattGTGCAAAATACTGACCGAAGTAGTTGAGAATAAttgtatacatatttaaatttgtatgtAAAAACTGAGTCCATTTTTTCATTCCACTTCATAAATCTTGAGTGTCATGAGCCTGTTTATATCATTCCTTGTTTATACTAAAGCATAAAGACACGAATGCGCCCCCAAAGGTGGCCGATTTTATTTTAAACGGTGTCACAGATGTGTTTCAGTGGACAATTTCTGTACATAACACATATAAACCGCAGTAGTCATCTAGTGTAGTTCAACATATTATGTTTTATCGTGTGGGCAAGGAAAACTTTAGGTGCAGGGGTCCGATTCGTCCTTTACTAtcaatttgtaatgtttttagatTTGTACATCAGGGTAGATGATGTTCTACAAAGCTGACTGATGTTTCTTTACTGGGATGATGTTGTACGCTTGGCCCCACGGCCCTCAATATGCCTTGTGTTTTCTTGTGCTCtcatattgaataaaaaaataacaccgTCTAGCAGTGACATAGCACGATACGAAAAGGAAACCATTTGAAACAACTTACTTTAATCTAGAGTGGAGACTGACTCCTACAGTATATGAATGCAGGAGATATTCTCTCCTTCGCTGTTCAGTCATCATCTTAAAAATGCAGCCGTTACTTCgcttttattattgatattattattactacaactaTTAATTTAATCGTTTATCATACAAAAAGAATCTAAACCTTACGTGTATACTATATTATGAGAGAAGCTATTGTATATCCATCCTGTGCCTATTGCAGCACAGCAGTGTTAGAGATCATCTTTTAGAGTAGACCTGTTATGGAATTATGAAAAGTAATTAAAGAAATCAGCATGAGAAAGCCTTTAATAATAGCACAAAGCAAGGCCGTAACTATGTAATGGACATTGGGGGAGAAACtaaataatagtaaaacaaaaatactattaaTCAGGTTTAACTATTTTAatcagtatataaatatatata
>TCONS_00028815
ATGAGTTCATTTAGCACCAGGGCGCTGACGCTGCTGTCGTCGGTGTTCGGGGCGTGTGGTCTGCTCCTGGTGGGAGTGGCCGTTTCCACAGATTACTGGCTGTTAATGGAGGAAGGCATCATTCTGCAGCAGAACCAGACCACAGAGGTCAAGATGGCTCTGCATTCTGGACTCTGGAGGGTCTGTTTTGTGGCTGGGCCAGAGAAGGGGAGATGTGTGGCATCTGAATACTTCACTGAGCCAGAAATAGAGATCACTACTGAGAACACAGCCAATATACTAAAAATGGTCAGGACCGCCACCCCATTCCCTATGGTCTCACTTCTTTTTGTCTTCACGGCTTTTGTCATAAGCAACATCGGCCACATCCGTCCCCAGCGTACCATTCTGGCCTTCGTCTCTGGAATCTTTTTCATCTTATCAGGTTTGAGTTTAGTGGTTGGTCTGGTTTTGTATATCTCCAGTATCAATGATGAAGTGATGAACAGGCCTCGGGAGCCAGAGCAGTTCTTTCATTACCATTACGGCTGGTCGTTTGCCTTTGCTGCCAGCTCCTTCCTGCTCAAAGAGGGTGCTGGGGTCATGTCAGTCTATCTCTTCATGAAACGTTACGCTGAGGAAGAGATGTACCGACCCCACCCTGCACTGTATCGCCCTCGTCTGTCTGAATGCAGTGACTACAGTGGCCAGTACCTGCACCCCGACTCGTGGCCTCCTCCTCAACGTGGACGCAGCGGCTCTGAGGTGTCCAGCGACATCTCCATTCAGCTCAACCAGACCCCCCTGCCTCCTCAAACGAAAGTCCCGCCTCCTCGTTATCATGCGCATATGCGTATGAGCGCATCCCCGTGTTAG

Function

symbol description
cacng7a Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG7 (calcium voltage-gated channel auxiliary subunit gamma 7).

GO:

id name namespace
GO:0051968 positive regulation of synaptic transmission, glutamatergic biological_process
GO:0019226 transmission of nerve impulse biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome biological_process
GO:0098970 postsynaptic neurotransmitter receptor diffusion trapping biological_process
GO:2000311 regulation of AMPA receptor activity biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0099590 neurotransmitter receptor internalization biological_process
GO:0098839 postsynaptic density membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0016247 channel regulator activity molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-814 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG7 (calcium voltage-gated channel auxiliary subunit gamma 7).

Ensembl:

ensembl_id ENSDARG00000063006

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028814 False 2509 mRNA 0.45 6 9840771 9882821
TCONS_00028815 True 855 mRNA 0.53 6 9842021 9867001

Neighbor

gene id symbol gene type direction distance location
XLOC_014576 cacng8a coding downstream 10806 9813287 ~ 9829965 (-)
XLOC_014574 si:dkey-14o18.2 coding downstream 53857 9732084 ~ 9786914 (-)
XLOC_014575 znfl1h coding downstream 64696 9771417 ~ 9776075 (-)
XLOC_014573 slc2a3a coding downstream 128241 9685165 ~ 9712530 (-)
XLOC_014572 BX927218.2 coding downstream 157263 9676517 ~ 9683508 (-)
XLOC_014578 NA coding upstream 21503 9904324 ~ 9906939 (-)
XLOC_014579 grin2da coding upstream 27141 9909962 ~ 10081047 (-)
XLOC_014580 BX950852.1 coding upstream 129677 10012498 ~ 10012614 (-)
XLOC_014581 BX950852.2 coding upstream 240412 10123233 ~ 10123347 (-)
XLOC_014582 dbpa coding upstream 294294 10177115 ~ 10196370 (-)
XLOC_014711 CR382300.3 misc upstream 9845869 19728690 ~ 19728755 (-)
XLOC_014570 NA non-coding downstream 231259 9594867 ~ 9609512 (-)
XLOC_014566 NA non-coding downstream 380442 9457546 ~ 9460329 (-)
XLOC_014565 NA non-coding downstream 442305 9391235 ~ 9398466 (-)
XLOC_014564 NA non-coding downstream 458750 9381458 ~ 9382021 (-)
XLOC_014600 BX005424.1 non-coding upstream 822638 10705459 ~ 10705475 (-)
XLOC_014603 NA non-coding upstream 976301 10859122 ~ 10881508 (-)

Expression


Co-expression Network