Fish Transcriptome and Expression Database

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model fish

XLOC_014580 (BX950852.1)

Basic Information

Item	Value
gene id	XLOC_014580
gene name	BX950852.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007130.7
NCBI id	CM002903.2
chromosome length	48449771
location	10012498 ~ 10012614 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028818
gccggcagctagctttttgcaactttcacatggttgcccactgaagctaaacagggctgcgcccggtcagtacctttatgggagaccacatgggaaagctataGGTTGCTGCCGGac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107453

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00028818	True	117	rRNA	0.55	1	10012498	10012614

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_014578	NA	coding	downstream	105559	9904324 ~ 9906939 (-)
XLOC_014577	cacng7a	coding	downstream	129677	9840771 ~ 9882821 (-)
XLOC_014576	cacng8a	coding	downstream	182533	9813287 ~ 9829965 (-)
XLOC_014574	si:dkey-14o18.2	coding	downstream	225584	9732084 ~ 9786914 (-)
XLOC_014581	BX950852.2	coding	upstream	110619	10123233 ~ 10123347 (-)
XLOC_014582	dbpa	coding	upstream	164501	10177115 ~ 10196370 (-)
XLOC_014583	znf865	coding	upstream	188556	10201170 ~ 10214265 (-)
XLOC_014584	shisa7b	coding	upstream	204984	10217598 ~ 10243148 (-)
XLOC_014585	cnot3b	coding	upstream	239438	10252052 ~ 10295173 (-)
XLOC_014711	CR382300.3	misc	upstream	9716076	19728690 ~ 19728755 (-)
XLOC_014572	BX927218.2	non-coding	downstream	328990	9676517 ~ 9683508 (-)
XLOC_014570	NA	non-coding	downstream	402986	9594867 ~ 9609512 (-)
XLOC_014566	NA	non-coding	downstream	552169	9457546 ~ 9460329 (-)
XLOC_014565	NA	non-coding	downstream	614032	9391235 ~ 9398466 (-)
XLOC_014600	BX005424.1	non-coding	upstream	692845	10705459 ~ 10705475 (-)
XLOC_014603	NA	non-coding	upstream	846508	10859122 ~ 10881508 (-)
XLOC_014611	FP074861.1	non-coding	upstream	1180635	11193249 ~ 11193363 (-)
XLOC_014612	NA	non-coding	upstream	1207147	11219761 ~ 11227568 (-)
XLOC_014575	znfl1h	coding	downstream	236423	9771417 ~ 9776075 (-)

Expression

Co-expression Network