XLOC_014584 (shisa7b)


Basic Information

Item Value
gene id XLOC_014584
gene name shisa7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10217598 ~ 10243148 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028824
GCAAGACCCCATCTCTGTGAACACTGCGCGTGCTGCATCATCTCATTCAGTTTGCTGTCAGCCAAGAGAGCGGCATCAATAACTTTGAACGGTTATTGTGTCACATTTCTTTCGGTTTCCGCGTCATTTTCCACAGACTGGAAGCGGGCAGCTGTTGCAACACACGCAGtGAAAACCCAAGACTAGCAAAGGAAACCAGAAGCCAAGACGAAGAGCCATCAGCCTGGATAAAAACCGCTTGGAGTCCCAGCCAGGAAAACAAGTCGTCTTCTTTTCTAAAGCAGATGAACTGTCAATGTTTTTTGCGAGCCAGGGGCTTTTTGAAAGGATGTTGATTTGCACAGACTGAAGATTTTCTCTTTGACTCTTTGCTACCAAAACCAGTGCCAAACACTAACTGTGCCAACCAGAAGCAAGAAATTATTTCACCAGTAATTTGTTAAGCCATTAACCTCAATTTACATaacagttaaatttttttttaaccctgtTTTCACTGTCCATTATAATACAATAGCATGTCAAATCCCCCATGGTCGAAAGTTTGTGTTTCCATCTCTAAGTTACAGTCAAAAACAACAAACCGCTTTTGCTTCCCAGAATAGGGAGAACAGTGCATTATTGGTTAAACATGCTTTATGTAAGAGTGGCCGTTACGAATGCATTAGTCTGAGAGAGTTCGACTCCTGATCGATTGATCGATGGATGGACAGGCTTATGGATGGCTGGCACAAGCCTCATTAAACTTTCCAAAGTGAGCTGCTGCTAATTCTGTTGATTAGTCGTCCATTTCACTCACTAAAGTCCGTTGAACTCTTCCTCTCCATCAGAAGTCATCCTGCTCTACGGACCCTGAGCAGAACTTTCAGGAGTCCCTGATACCGAAGCCATACGTCTCATAGCCATACTAACGTCAAGATCCCTGCCATCGCTGCATGCATTGGTCATTCTAAAAAAGCAAGTGCATGGGTATATTCAGGAATATTTTTAGAGGTCTGTGTATTTGATGGTGGTCCAGGGGCTTGACGTTTCGTAATTTGCCATATTCACCAGCGAGCCATTGACGCGTTTACTGTGTTGACAGTGGGACGACATTTAAAGTTGTCCCACTACTTGAAAAGACGCTTTTTCATACTTAGGATAGGTCTATTGGTACGTTTCCACGTATTCCACATTGACGGATGAATCCCGACTTGTTCATGCCTGTTCAGTGGGCTCAACCATGCTGTCCTGTCAGAACTGGGCCCAAGCCCCcgtttgttttattctgttggGTTGAGCTAAATCCAGAGCAGAGACACTCACGCAAGAGGGTCCAACACACATAGGCCCCTGACCTTTACCTAGACTTGGTCCAACTTTCCGTTTCCTCTCTTCCTATCCCTTAACACTTCTTCCTTTCTGGCCTGACTTGTGTCATCAAACCAGGAACTAATATATTTACCTGCTGCTTGTAACACTTCGCGAGTGCCCTAACCGACCTACACTCTTTCAAAGCCTTCGTAATGAGCCTTTGTTCCGTGGTGCCACCTTTAGAGAAAATATCAGCTCTTCCCCACCTCTAAACTCTAAAAAGTTAAACACTCTTTCATTGTTCCATCCTACCTTCATCTTAAATCTCAGTGGCATCCCTCTGAAAGTCGACGTAACTCACTTTCTTTTTTCTCCAGAGAACTGACACTGTTAGCCTGATTATTTGGACTGCACAACAGAACCTCAATGACCTTGAAAGGTAGTCTCGCAAGACATTCTCATTGACAATATAAGCCTAAAGCTCTGTTCAACTGAGATTTGTTTACAAAACGAAATCAGTTCTTGGAACTGACAATGACAATTGTTTACAAATCACATGGTGGTTGTAGTAACTGTCTCTATATATTTATGGTTGTTTAGTGAGTCAACAACTGAAGTGCCAACCAGAATAGAGGATATTTAGTAAAACAGTTTACACTCGAGCAGAAATGTTTACATGTTGCCCGTAAGGTGAACTCAGATTGAGTATTGAATGAATTGTTAGTTCCATAGCTCAGTTTAGTAAACAAAGCCAGCTTTTGAGAAGCTGCTGTACCCCTGTCACTTTAAGACGTTTACATTGTTcaaatatacattttgtttacAAGACTTAAGTACTTGCAACAGAAGAgtcaaacatttttgttttgtgtttggcaTTCGAGTCATTTTCATATGCATAAAAAGTTGAATTAAGAGTAAGAATTTCCTCATATTTAATCTGTGCCAAATCAAACTCGTCAGACATTCCACCTTTCACCCATTAAGCATTAAACTTGTACATAGATTTACCTCATTCCTGTTAATAGTTTCCTCAGAAATATGTTTACATCCTAACCAAGAGTCTCATGCTTTTTTTCTTTAACCTGAACTTGCGCACTTGGATGTGCTTTTTGCATATGAAATTATTTGCATACTAGTGTATGCACATGTGAAAGAGAGATTAACTTGTCTACATGTCTTATATATTGCCATACTGACTTGCAACTTTTGATAGGTGCCAGTTTTTTGTAGTCCTCAGAAGTCTTTTGCAAGAAGGCTTCACTTTTTTTCATCTTTGATAAAAGAATAACCCGCCCCCAATCAAGATGCCACCAGCTGCCATCTTGCTTTTCTTCCTGTTTGGCCCTTTGGTCTCCGCAGTGACTCTTACCTCTGAACGCTCCTCAGTGAATGGGGGGCCGGTGCTGCTTCTGTTGCGAGGACGTGGCCGTAAGGCCCCTCCGCCTGATGTGCAGGGCAAACAGGCCGCCGCAATGGCGGCAGAGCCAGAGGCAGCCGAGATCCCTCCAAGGCCCCTGCCGCAAATTATGCTTCCCCTCAATGTGACAGACTATGCCCTGAAGCCCCCGCTGGGAGCCGCACAGGTGGCACCTCCTCCTCAGCGACTGGTGGACGTGGATGTGTGTCAGGGCTACTATGACGTGATGGGACAGTTTGACAATACTTTTAACTGCACCAAGGGCACCTACGTCTACTGCTGCGGCACCTGCCACTATCGCTTCTGCTGCGAGCACCAACGGCAACGTCTAGACCAAGACTCCTGCACTAATTACCGCTCACCTGACTGGGCCGTCACGGCGGGACCCATCACCCAGCCCCCGGTCCGGCACGACCCAGATTTTGACCCGCTGCAACAACAGAGCAACAACACCGCTTACGTCATTGGGGGAGTCATCTCTTTCACCATGGCCGTAGCCATTGGGGTTAAAGTGGCCTTCCATAAACTGTCTCGACGGCCGAGGAACAGAGACATCAACATGCCTAGAGCTCTGGTGGACATTCTGCGTCACCAGTCCAGTCCGGTCCAGCAAGGAGAGAGAAACAACAGCACGGTCCTCACAACCGCCACCTCCAGCGAGGGCACCCTAGGGCGCCAGGCGAAAAACTTCTACGCTCCTGTCCTCCAGAGCAAAGACAACCGGACTGGGAAACACAGTTTTGGCCAGACTGGGTCCAGTCCTAAACACACTGCTACTATCGAGCGAGTTCCACGCATGAACAACACCCAGCTGGCCTCCACAGGAACACTGCTGTCCAGCAAGCACAATAATTCCGGTTTCCACCCCTCCTTCTCTCACTCCTTCCACAACCTGGCCCAGCTACCTCCATCATACGAGACGGTGATGAAACCAGAGCTTAACCGCTACAGCTCCCTCAAGAGACTGGAGAAAAATCTGGATGATTATTCTGGGTATTACACCTCCAAGAGAAGGCCGAACAATGCTCCGCCCAGCTTTCACTCCTCCCAGCACCACCTACCCTGGGGTGGTGACTTCACACTGGGTGCCCGCGGTACTCTACCGCTAAACACGTCCCGCACGCGCATTCACATGCCAAGCACTACTTCCACCCCCAACCCCTACCCTTTACCCCAGACGCAGTACAACCCTACATTCGACACGATGAGCAAACCCCCTCGCCGGGTGATGTCCCAAGACCAGCTTCTGGCGCTGGGGGAGGGGAACACTCTCTCACGCCTCTCCAAGAACCAGCAGCATCTGTACTACAAACCAATGACCACCAGCAAGAGCTCGAACACCCAGACTCTGCGCAAGTCTCATGAACGCCTCCTGGTGTCCCCGGACCGCCTGGAGGAGCGAATGATGGGTGATTATGGTGGGATGGTGCCAACCATGTCCCGTCTCAGCCACCACCAGAAGGCGCAATCCCAGCAGAACGTGTGTGTGACCCCTTCCCTAGACCGGCATCACATGATCAAAATGAATTCGCACCCTACCTCTGGTCGTGAGCAAGACCATCCTGCCATTCCGTCCGGTCATGGGACTGGGACTTTGGGATGGGGGGAGATCCACGGCTCTGGGGGAGGACCCGGAACAATGGGGCACAACGCACGCCGGATGGCCTTCGCCACGAAACGCCAGAACACCATCGAACAGCTGCACTTTCTCCCTGGAGGtggcggaggaggaggaggtgcaGGACAGGCGTTGAGGACGGGGAGCAAGAACGAAGTGACCGTGTGAGCGCAAAAAGAAAGGAGTTGATGGAAAGATGAGGTGTGACTGCGCAAGCCGAAGGGAAGGAAGATGACGGAGTGCAAAAAAGGCTGAAGACAGAAATGGAGAAGGAAGGGGGTCAGGAATGATGCCCATATGAAGGGGTACACAGTGTATTGCAAGAGAGAGGAGAAAGAGGGATATGAAACTATATCATAAACTTTTCTGTAGATCCCTAAATTGCCAAATTCTTAATCAATAGAAACCTAAAGAGGGGTTTAGGTCGCCTCTGATCTGTGTGTAGCATATAGTATTTCGATCACACCATTCAGGCATGGAGATACAAAAGCTAATAGGTTCATTATTAGAATAGGCCACGTTTTCTCTAGGTTGTACATTCCAGCTAATGTAAAAACCAAGTGGTTCAGATTTGTCTGCTTTTAATCCAATGGCAGAGAATTGAGTCTGATTTTGCCAAATTTCGGGGGTTTCAAACTAAGTGTTACTTTCAAACAAGTGTTGGGGGTGTTTCACACCTTCATCACTAAAACATGGAAACATTGACAAGTATTGGACGAGACTGGAGAGTGTCCAATAGTACACTGAATTACCTCAGAGAAACCGGAATCCAGATTCAAATCGACTTGGGAATTAATGGAGTTTGCCATCAAGTGAAGAAAGTCCTGGTAATTCGTCAACGAGTTGAACTGGAAGGACTCGTCACGCGTTTTGTGACCTGACTCTTTAGTCTGCACTGTTAATGTAAAGTCCAAATGTCATCAGCCATATATTAGAGCTTATTCAAATGGAAATACAACTGAGGAAAACATTGTCATTGGGAGACGGGTGTTATACTGATGATGAGATTTTTCTGCCTCTCATACTGAGACTGTGAATCAAAGTCGACATGAAatactttctttttttgcattgtggATAACATTTATAATAGGCTGTCAGATCGGGTCTTGTGATCTGAACTAAAAATGTTCGGAAAGCCAATTCAGCCATTCAAATCTGATAGAAGTCATGCCTCATTCTTGCAtgtttgaccaatcagagaacaGCTTCCTATATGACGGCATCAATTGGAGTCGTCACGGTTGTTCTGGTATTTACAAGCGTTTAGAGCTGAGATTTAATCATGAGCATGCAGTATGACAAATAAGACAGAGTAGTCTTCACACTTCATTTGCAACTCGAGCTGTTGTATTAACGGGGGGGGAAACGGGGAAAGGGTTTGCTCATACAGTGAACGTTTTAATCCAAGGGCTATTCTGAAACTCCTTCATGTGTGTCTGTGCTTCCGTGTTCTGACGGCTTTTTATCTTTTCCTGTGACACGGCTGTGCAGGACATTGAGGCTACATGCCAATGAGTGtacaaaacagaaaaacagaacAAACTCTGCAAAGCTACTTTGTCACACTAGGATGCATTATTATCTAAGCGACGAGTTAGAGGAGTTAAAAGGTGTCTTGTTTATCTATATTATATTCAAGAAAGATGTCTTTTTAGTTAGCGATTTCTGTGTTTTTCAGCTGTCTCCACATCAAACGGACACTGTTGTGGTGGAATGTCTGAGAAGGACCTGGCTGAGTGAGATTTCTGGGCCATAATATAGTATTTTAGATCACTCTGCAATGTTTAAGCTTTTATTACCTTTAACTGAAGttaacaatgtttaaaaaaaaaaacgattttaaAAGATAACTGAACCCCGAATGTTCAAATATGTACACTTGCCAATTTATGCGCATAAGTCATCAGTATTCTTCATATTCTTGATTatccttttatttacttttcctcCGTGTGAATTCAGACATTGTTTTTTATACCTGTTTTCTGTTTGAGTTTCTAGTGGATTCTAACCTTTGTAActcgacaaaaaaaaaagcagatgcaATCATAGTGAAAAGACAAAACGCATGAAGATGTCAAAGCCAGTGTTGATGATGTCATATTGCTGACTTCTGATGTCAAGGTGTGTATGTGTCCAGTTcgtgtgtctgtatttgtgtgcttgtgtgtatttCAGTGTCTATTTTGGAATGCTTTATCTCGCATTTTATCCGACTCTGTCGGAGAATGTGCATTTCAGAAAacccaaaatgtaattttattttttaagtaagtgTCTCTTTGAAtgcaaaaacaactaaaatattaataataattaagaataataatTTTCCATTGCTGCATTCACCAAAGTTATGGGAAGTAAACAACCACCAGAAtagtttctgtatttattttgagattttttttttattataattgttctTTTTTTGCCATGATATACATGAAACCTGTTGTAAATTTTCTGGGGGAAATGCCAAAATGCCATGCATAAAATATTTAACAGCAAAAACTTTacgtattgttatttttaaataaaatcctcACCATTAGGTAAAATGCT
>TCONS_00028825
TGTGCATTACGAAGAAGTAGCAGCCCGTGTAGAATATTTACCGCAAAGGGAGGATGAAACGAGCAAACCGAGCGCGGTGATCCATCTGCCCATCTCTATCTGCATGTCACATCCCTCTCTCCTTCACTGCAGCAGAGCTATTCTGAGAGAACACTTTCGACCCACGCACTGACAAATAGATGGAGAAAAATCAAGAGGGAAGGAAGGTGTAGCGTGAGACCGAGTTGCTATGTGTGCCTGTCTCTCCGCTTCACATCATTAGCCACGCAAGGCGTTGCCATCGGCGACTTGGTGAGCGCGCAAAGCAAAGGGCACGAGATGCACTCATGAGAGGCCGTTTAAAGtGAAAACCCAAGACTAGCAAAGGAAACCAGAAGCCAAGACGAAGAGCCATCAGCCTGGATAAAAACCGCTTGGAGTCCCAGCCAGGAAAACAAGTCGTCTTCTTTTCTAAAGCAGATGAACTGTCAATGTTTTTTGCGAGCCAGGGGCTTTTTGAAAGGATGTTGATTTGCACAGACTGAAGATTTTCTCTTTGACTCTTTGCTACCAAAACCAGTGCCAAACACTAACTGTGCCAACCAGAAGCAAGAAATTATTTCACCAGT

Function

symbol description
shisa7b Predicted to be involved in regulation of AMPA receptor activity and regulation of short-term neuronal synaptic plasticity. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine membrane; postsynaptic density; and postsynaptic membrane. Orthologous to human SHISA7 (shisa family member 7).

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:2000311 regulation of AMPA receptor activity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-31 Predicted to be involved in regulation of AMPA receptor activity and regulation of short-term neuronal synaptic plasticity. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine membrane; postsynaptic density; and postsynaptic membrane. Orthologous to human SHISA7 (shisa family member 7).

Ensembl:

ensembl_id ENSDARG00000063144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028824 False 6899 mRNA 0.44 6 10217598 10243148
TCONS_00028825 True 608 processed_transcript 0.48 2 10238453 10242111

Neighbor

gene id symbol gene type direction distance location
XLOC_014583 znf865 coding downstream 3333 10201170 ~ 10214265 (-)
XLOC_014582 dbpa coding downstream 21228 10177115 ~ 10196370 (-)
XLOC_014581 BX950852.2 coding downstream 94251 10123233 ~ 10123347 (-)
XLOC_014579 grin2da coding downstream 136551 9909962 ~ 10081047 (-)
XLOC_014580 BX950852.1 coding downstream 204984 10012498 ~ 10012614 (-)
XLOC_014585 cnot3b coding upstream 8904 10252052 ~ 10295173 (-)
XLOC_014586 u2af2b coding upstream 55854 10299002 ~ 10324573 (-)
XLOC_014587 ccdc106b coding upstream 82212 10325360 ~ 10330831 (-)
XLOC_014588 si:ch211-232m10.6 coding upstream 113197 10356345 ~ 10373630 (-)
XLOC_014589 zgc:194578 coding upstream 132634 10375782 ~ 10395683 (-)
XLOC_014711 CR382300.3 misc upstream 9485542 19728690 ~ 19728755 (-)
XLOC_014578 NA non-coding downstream 310659 9904324 ~ 9906939 (-)
XLOC_014572 BX927218.2 non-coding downstream 534090 9676517 ~ 9683508 (-)
XLOC_014570 NA non-coding downstream 608086 9594867 ~ 9609512 (-)
XLOC_014600 BX005424.1 non-coding upstream 462311 10705459 ~ 10705475 (-)
XLOC_014603 NA non-coding upstream 615974 10859122 ~ 10881508 (-)
XLOC_014611 FP074861.1 non-coding upstream 950101 11193249 ~ 11193363 (-)
XLOC_014612 NA non-coding upstream 976613 11219761 ~ 11227568 (-)
XLOC_014620 CR548625.1 non-coding upstream 1482348 11725496 ~ 11725631 (-)

Expression


Co-expression Network