XLOC_014852 (nrsn1l)


Basic Information

Item Value
gene id XLOC_014852
gene name nrsn1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 28356753 ~ 28367413 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029318
GTGAGAGAGATGGCCTCTTGCTCTGAGGTTTGTGGGTCTGGTCATGCTGTGGACTCTGGCTTTCGTGTTTTTGGAGTGCGCTCCTATTTACACCACTTCTATGAGGAGTGCACCGCCTCAATGAGGGAGCAGCAGGAGGATTTACAGGGCCAGAGATCATCACTGCGGTGGAGCTCCAGCCTCTGGAAGGTCACTCTTGTCGTTGGTGTGGTGCTCCTGACAGTGGGTTTGGTGGTCATGACAGTGGGTTATGCCATTCCCACCCGCATTGAAGCTTTCGGGGAGGGCGAGCTGCTGTTCGTGGACCGCCAAGCCATGCGCCACAATCACTCCCTACACATTTGCGTTCTGGTTGGGACGGGGCTTCTTACTCTGGGCGGGGTTTTGATGGCGGGAGGGATCCTGACATCCAACTTCTCCACCACTCCCACTAAACAGGAAGATTCTCGAAAAGGGGGAACCAGAGTCCCGAATGCAGTGAGAAGCCCGGCAGACCCTGTGATGAAGCCGCCCAGTCCGGCCTCTAGTGATGGAGGAGTATCCCCACTCGCTCGGGATGATAAAGTTCACCAGAGCTCATGAGTAAGCTGTTTGACAATGCCTGTTTTAGAGTGCTGTCAAACTCGGTGAAAgctctttgtttattttcatgagaaatttgagaatttttacattttgtgtgtTTGATAAATGTGTAATTATAAGAGCCTTAAATTGGTAAAACAAGAAATAGATCAACCTGTGCCA
>TCONS_00029319
GGAGACAGTCGCGCATGCGCCTTTTGCGCACTCCAGCAAATAAAAACTTTGGCTGATGAAGACACGAAAACAAGCAACAAGGATCGATTACTGAACATTCGGTGAGAGAGATGGCCTCTTGCTCTGAGGTTTGTGGGTCTGGTCATGCTGTGGACTCTGGCTTTCGTGTTTTTGGAGTGCGCTCCTATTTACACCACTTCTATGAGGAGTGCACCGCCTCAATGAGGGAGCAGCAGGAGGATTTACAGGGCCAGAGATCATCACTGCGGTGGAGCTCCAGCCTCTGGAAGGTCACTCTTGTCGTTGGTGTGGTGCTCCTGACAGTGGGTTTGGTGGTCATGACAGTGGGTTATGCCATTCCCACCCGCATTGAAGCTTTCGGGGAGGGCGAGCTGCTGTTCGTGGACCGCCAAGCCATGCGCCACAATCACTCCCTACACATTTGCGTTCTGGTTGGGACGGGGCTTCTTACTCTGGGCGGGGTTTTGATGGCGGGAGGGATCCTGACATCCAACTTCTCCACCACTCCCACTAAACAGGAAGATTCTCGAAAAGGGGGAACCAGAGTCCCGAATGCAGTGAGAAGCCCGGCAGACCCTGTGATGAAGCCGCCCAGTCCGGCCTCTAGTGATGGAGGAGTATCCCCACTCGCTCGGGATGATAAAGTTCACCAGAGCTCATGAGTAAGCTGTTTGACAATGCCTGTTTTAGAGTGCTGTCAAACTCGGTGAAAgctctttgtttattttcatgagaaatttgagaatttttacattttgtgtgtTTGATAAATGTGTAATTATAAGAGCCTTAAATTGGTAAAACAAGAAATAGATCAACCTGTGCCA

Function

symbol description
nrsn1l Predicted to be involved in nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and transport vesicle. Orthologous to human NRSN1 (neurensin 1) and NRSN2 (neurensin 2).

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-68 Predicted to be involved in nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and transport vesicle. Orthologous to human NRSN1 (neurensin 1) and NRSN2 (neurensin 2).

Ensembl:

ensembl_id ENSDARG00000056572

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029318 False 747 mRNA 0.51 2 28356753 28360033
TCONS_00029319 True 848 mRNA 0.50 3 28356753 28367413

Neighbor

gene id symbol gene type direction distance location
XLOC_014851 ndufs6 coding downstream 72876 28281201 ~ 28283877 (-)
XLOC_014850 NA coding downstream 117696 28237921 ~ 28239057 (-)
XLOC_014849 irx1b coding downstream 226095 28127654 ~ 28130658 (-)
XLOC_014848 ube2ql1 coding downstream 389973 27957119 ~ 27966780 (-)
XLOC_014847 srd5a1 coding downstream 498720 27836913 ~ 27858033 (-)
XLOC_014853 CR391974.1 coding upstream 74428 28441841 ~ 28441960 (-)
XLOC_014854 NA coding upstream 126560 28493973 ~ 28789409 (-)
XLOC_014855 NA coding upstream 276225 28643638 ~ 28645384 (-)
XLOC_014856 NA coding upstream 450208 28817621 ~ 28824390 (-)
XLOC_014857 NA coding upstream 555131 28922544 ~ 29030799 (-)
XLOC_014711 CR382300.3 misc downstream 8627998 19728690 ~ 19728755 (-)
XLOC_014845 NA non-coding downstream 554196 27801055 ~ 27802557 (-)
XLOC_014843 BX548075.2 non-coding downstream 751013 27589335 ~ 27605740 (-)
XLOC_014841 BX548075.1 non-coding downstream 772016 27581750 ~ 27584737 (-)
XLOC_014839 NA non-coding downstream 781659 27571706 ~ 27575094 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G235308 NA non-coding CI01000054 null 9437469 ~ 9441851 (-)
rainbow trout (Oncorhynchus mykiss) G233475 LOC106579923 non-coding NC_048567.1 CM023221.2 20500147 ~ 20500409 (-)