G235308


Basic Information

Item Value
gene id G235308
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9437469 ~ 9441851 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU266891
TTAAGTTTGCTGACATTGATTTATTGGGCTTGTTTAGAGAAGAGCATTTAAATACATTAACATAATGAGACAATGAGACTGTAGACAATTATGGTGTACAGTAAATCCCTTTTAGCCTCTCACATTCTATTTAACTGCAGCTGATGAAAGAGTAAGTTAGAAAGAGAAAAATATTAAGAACAGAATTTCTGACTGAAAAAGATGTCAAGGATCCAGAAATAGAGACATTGAGAGTAGGTTTGTGCCAGATTGTGCATATTATAATGACAGACCTGCATTTTCTACAGAGTTTGCAAGGCAGCACTGTATTGCTATTCCTCAAACATTCTGGTTATGGCTTGTTCTAAGCTACTAAATTCTAAGGCTCTTCCTAAATTAAGTCAACCCAAACCACATAACATCAGACTCCACTTCAACTTGTGCTCAGAAACTTTAGCATTCGGATTCCAACAGCTAACATCATTATAACTTTTGCATTTTAAATTCCATTTGCATAATGAATTGTGGTTGGTCTTTTCTTTCTTAAAACATCTTTAACTTTAAAACACTTGAAAAGGTGCACACTGGGCACAAAAGATGCTTTAAATAGTAATCTCTTTATATTTAATATAGACTACCGTTCAAAAATTTGGGGTAGTGAGATTTTTTTTTAATGCTTTTGAAGCCTCACCAAGCCTGCTTTTATTTGATAAAAAAATACAGTAAAAGCAGTAATAATATTGTAAAGCATTATTACAATTTAAAAGAACTGTTTCCTATTTTAATGTATTTTGAAATGTACTTTATTTTTGTGATGGCAAAGCTGAATTGTCAGCTCCATTGTGATTACTCAGTGTCACATGACCTTCAGAAATCATTCTAAAATGCTGAGTTGCTGACATTATTATTATTATTTTTTTTTACTATTATCAGTTTTGAAAACAGTTGTGCTGCTTAATTTTATTTAAGTGGAAACCATGATTTTAAGGATTCTTTGATGAATAGTTAGTTCAAAAGAACCACATTTATGTGAAAGAATCTGATGTAACATTATAAATGTCTTTGCTATCACTTTTGATCAATTTAATCCATAATTGCTGAATAAAAGTATTTTTTTTTAAATCATTTTACTCAAAAGCTTTCTTTTGCTGCCTTGCAACCACTTAGTGGCTGTTCGTTTGATCAATACTGTAATGTAGAAAAATACAAAACTTATTTTGACAATAACTATACAAGTACAGGACAACAGATGGCACAGATTTGCTCTACTTGTTGTTTTGATAAAACAAGAAATAATTAATCATTTAAGGCTCTTATCACATAATTATCAAACACAAATAAGTCTCCCAAATTTCTCATTGAAATAAACAAGGAGCTTCTGCTGATTTTTTCGACAGCACTCTTGAACGGGCACTCTCAAACAGCTCTTTTATGAGCAATGCTGAACTTTATCTTCCCTAGCGAGAGGAGACACTCCATCACTAGAGGCTGGACTGGGAGGCTTCATTACAGGGTCTGCTGGGCTTCTCATTGCACTCAGGACTCTGGTCCCCCCCTTCCGTTCTCCTCTTGAGTCTTCCTTTTTTGTGGGAGTTGTGGAGAAGTTAGACTTCAGGATTCCACCTGCCATCAGAACCCCGCCCAGACTGAGAAGCCCTGTCCCAACCAGAACACATATGTGTAGCGAGTGATTGTGGCGCATGGCCTGTCGGTCCACGAACAGCAGTTCGCCTTCACCGAAAGCCTCAATGCGAGTGGGGATGGCATAGCCCACTGTCATGACCACCAGCCCCACAGTCAGGAGTATGACACCAACCGCAAGAGTGACCTTCCAGAAGCCTGAGCTCCACCGCAGCGGTGATCTCTGGCCCTGAAAATCCTCCTGCTGCTCCCTCATTGAGGCTGTGCACTCTTCGTAGAAGTGGTGTAAATAGGAGCGCACTCCGAAAACACGACAGCTGGAGTCGACCGCGTGACCAGACCCACAAACCTCAGAGCAAGAGGCCATCTCTCAGACCTGTGATTACAACCGCACATCATTACAGGCAACAAACAAGACATCCTAAAATATTGAAAAAGCAGTTTTCAACTTTCTTACCCTTTAGTCATCATTTTAAATTATATATAACAGTTTCCTGCATTTCTCAATGTGACCTGTTTTTTAAAGGGTTAGTTCACCCAAAAATTCTGTCATTAATTACTCACCCTCATGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU266891 True 2192 lncRNA 0.38 2 9437469 9441851

Neighbor

gene id symbol gene type direction distance location
CI01000054_09218869_09223868 NA coding downstream 213350 9218632 ~ 9224119 (-)
CI01000054_09077309_09080163 NA coding downstream 356657 9076831 ~ 9080812 (-)
CI01000054_08953766_08966617 TMEM57, TMEM57A coding downstream 470852 8952134 ~ 8966617 (-)
CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding downstream 494882 8937312 ~ 8942587 (-)
CI01000054_08721571_08723333 NA coding downstream 713387 8721008 ~ 8724208 (-)
CI01000054_09453616_09482480 LPCAT1 coding upstream 10258 9452109 ~ 9482723 (-)
CI01000054_09483912_09484282 MRPL36 coding upstream 41961 9483147 ~ 9484282 (-)
CI01000054_09488559_09488870 NA coding upstream 46425 9488276 ~ 9488870 (-)
CI01000054_09495785_09497239 IRX4B, IRX4 coding upstream 53599 9495450 ~ 9497682 (-)
CI01000054_09531778_09544007 NA coding upstream 89659 9531510 ~ 9544510 (-)
G235298 NA non-coding downstream 36903 9400361 ~ 9400566 (-)
G235250 NA non-coding downstream 120671 9316532 ~ 9316798 (-)
G235244 NA non-coding downstream 134765 9302438 ~ 9302704 (-)
G235239 NA non-coding downstream 144077 9292830 ~ 9293392 (-)
G235231 NA non-coding downstream 160111 9277139 ~ 9277358 (-)
G235350 NA non-coding upstream 84997 9526848 ~ 9527267 (-)
G235368 NA non-coding upstream 114913 9556764 ~ 9559903 (-)
G235575 NA non-coding upstream 134743 9576594 ~ 9576876 (-)
G235582 NA non-coding upstream 140571 9582422 ~ 9664231 (-)
G235591 NA non-coding upstream 146208 9588059 ~ 9657253 (-)
G235216 NA other downstream 188931 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 2265796 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 2783456 6628082 ~ 6642160 (-)
G232274 NA other downstream 4228229 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 4765236 4670151 ~ 4681361 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 421470 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 1362020 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 1429253 10871104 ~ 10881495 (-)
G236748 NA other upstream 1843343 11285194 ~ 11295784 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014852 nrsn1l coding NC_007130.7 CM002903.2 28356753 ~ 28367413 (-)