CI01000054_08721571_08723333


Basic Information

Item Value
gene id CI01000054_08721571_08723333
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8721008 ~ 8724208 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08721571_08723333.mRNA
ACAATCTATAATATAGGCTAGAAAAATATATACTCAAATAATATAAGCCAGAATGTAAAATATATAATTTAGTAATCTGTTCATTCAATTCTAGAGTACACATGCATCCACCAATTACCATGAGCAGTTTAATACAGCATACTGGTTGTTTATCAGAGTAGTGGGTAAAATATGCACTTATATTAATCATTAAATGGTACTGTTGTTTTGAGGACAGTGAGCCGAGTATATTGGACTACAGGGCACATTCACCACTGACATGTCATAAATGCTTTAGTTCTAGTGTGTAGCTCAATGGGTTCAATTAAACTGAAACCCCATTGCTCTCAGTGAGCAGAGAATTCAACAAGTCACCCTGTTGGTTCCCTCTTCTTTCTAGTCTAGTTTGATGCCATTTTCTATTTCCATGGAACTAAAGTGGAATCAAAGAGGTGGGACATGGAGGGTTCAATAAGTGGGCGGGGCCGCGCTTCAGATTGGTTCGAGTTCCCGAGGCACGCCCATGGGCGGGGCTTTTGGTTATCTTGAAGCGCTGTGGAACTAGAACTGGTAGTAGTAGGTCGTCTTCGACGCTCACGGGTGGAAGAGAAGAGTGGATCATCTCAAGTTTTCCTTATAAAGGAAAAAAAAATCACCAACTTTCCTCGCGCCTTTGGATGCACGTTACGCCCGTTGGTCTGGATTAATTTTTCTTCCACCTACCTGAATTTGAGTTATTTTTAATTTGCTTTAAAACCACATTAAGAATAATGGGATCCCAGGCATCAAAGGGAGGAGTGGCTGTGGAGGGGAAAGCCGCCGCTGCTGACCCGGCTGCCGTCAAGACTAACGGACAGGAGAACGGCCATGTTAAGACCAATGGCGATGTCTCTGCCAAGGCAGAGGGAGATGCCGCCACCACCAACGGTTCTGCGGAGGCAGCTAAGGAATCTGAGGCTGGAGCCGGTGATGCCATCGAGCCCGCGCCCGCCGCCGAGGGAGAGGCCGCCAAACCAGAGGGCGAGGCCACCAAGGAGACCCCCAAGAAGAAGAAGAAGAAGTTCTCCCTGAAGAACTCCTTCAAATTCAAGGGCATCTCACTGAAGAAGAACAAGAAGAGCACTGAGGTGAAGGAAGAGGCTGCTGCTGCTGCTCCGGCCACCGAAGAGAAGCCAGAGGAGAACGGGGCGGCCGCTGAGGAGAAGAAGGAGGAGGAGACCAAGCCCGAGGAGACACCCGCCCCCGCCGAGACCCCCAAGGCCGAGGAAACCGCAGCCAAGGCTGAGGAGCCTGCTGCCCCCAAGGAAGAGGCTGCTGCACCTGCTGCAGAGCCCACAAAACCAACAGAGGAGACCAGCTCAACACCTGCACCATCCGAACAGAAGGAGTGATTGTACTTCACAAAGGACTTTGTGAACTGTTTTTCCAAGAAAAAATATATATTTATATATATGTGTATATGTATACATATGTATATATACATGGATATATGTATATGTATATATACACATGTATGTGAAAAAAAGACTCCTCGTGCCACTTTCTTCAAGATTAAAAACAAATGACAGACTAGATTCACTAGTTCACTTCCCTGATTATGGCTCAAAGATCTGGAATTCCGAGCGAAAGCCGAAACCTTTTGGAAGCAGGATGTCAGTGCAAGAGTGAGTTGAGGATGGGATCAAGGAGGAGCATCTTTCAAGCCCACCACCGAATAGATGCGACTATACTGATGAATTGTGCAAGATAAACATCACCACATATAATGACTGTTAAAAAAAAGGAAATCGAAAAAGACTTGCCAACTTTCTACATTCCTATATTTTAACCCAAATTTAAGTATTTTGTGGTGTATAGAGAACCATTTTAAATATCCAGAAGGCTTTGTCTCGTTTGTTTGAAATCGCATTTTAATTTTCATCTTGGCTTTAAAAAAACAAAAAAACAAAATAAA
>TU266502
TTTCAAGCAAAAATCATTTTTGTAATGCACCGATTTCTGATTCAACACTATAATGATTTATTTCACTATTATGACATTTTTAGTACCACAGCACAGATATAAATATTGTTCATATTGCCATTATACACAATCTATAATATAGGCTAGAAAAATATATACTCAAATAATATAAGCCAGAATGTAAAATATATAATTTAGTAATCTGTTCATTCAATTCTAGAGTACACATGCATCCACCAATTACCATGAGCAGTTTAATACAGCATACTGGTTGTTTATCAGAGTAGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08721571_08723333.mRNA False 1933 mRNA 0.45 2 8721008 8724082
TU266502 True 290 lncRNA 0.28 1 8723919 8724208

Neighbor

gene id symbol gene type direction distance location
CI01000054_08710955_08718087 HDAC1, HDAC2.S, HDAC2, HDAC1.S coding downstream 2921 8710787 ~ 8718087 (-)
CI01000054_08692653_08694052 NA coding downstream 26956 8692139 ~ 8694052 (-)
CI01000054_08652832_08667152 NA coding downstream 52079 8652789 ~ 8668929 (-)
CI01000054_08574533_08590975 NA coding downstream 129716 8574480 ~ 8591292 (-)
CI01000054_08425960_08439362 NA coding downstream 281578 8425943 ~ 8439430 (-)
CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding upstream 213230 8937312 ~ 8942587 (-)
CI01000054_08953766_08966617 TMEM57, TMEM57A coding upstream 228052 8952134 ~ 8966617 (-)
CI01000054_09077309_09080163 NA coding upstream 352749 9076831 ~ 9080812 (-)
CI01000054_09218869_09223868 NA coding upstream 494550 9218632 ~ 9224119 (-)
CI01000054_09453616_09482480 LPCAT1 coding upstream 728027 9452109 ~ 9482723 (-)
G234936 NA non-coding downstream 14941 8705754 ~ 8706067 (-)
G234935 NA non-coding downstream 30413 8690311 ~ 8690595 (-)
G234926 NA non-coding downstream 79833 8640541 ~ 8641175 (-)
G234911 NA non-coding downstream 122609 8598104 ~ 8598399 (-)
G234946 NA non-coding upstream 9329 8733411 ~ 8733740 (-)
G234969 NA non-coding upstream 42363 8766445 ~ 8766674 (-)
G234982 NA non-coding upstream 72107 8796189 ~ 8796582 (-)
G235016 NA non-coding upstream 114534 8838616 ~ 8838853 (-)
G235026 NA non-coding upstream 124202 8848284 ~ 8848634 (-)
CI01000054_07165957_07169539 HEYL other downstream 1549335 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 2066995 6628082 ~ 6642160 (-)
G232274 NA other downstream 3511768 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 4048775 4670151 ~ 4681361 (-)
G231645 NA other downstream 4738185 3981847 ~ 3982823 (-)
G235216 NA other upstream 523957 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 759065 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1139239 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2079789 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2147022 10871104 ~ 10881495 (-)

Expression


Co-expression Network