CI01000054_08692653_08694052


Basic Information

Item Value
gene id CI01000054_08692653_08694052
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8692139 ~ 8694052 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_08692653_08694052.mRNA
ATGCCTGATTCATGTGTTGCTTGGGGCTGTAAAAACCGCCGCACACCCCTGACCAAATCCCGGGGAATTACCTTTCACAAGTTTCCTAAAGGTAAAGCGTTGAGGAAGCAGTGGGAAATAGCCCTAAGAAGGAAAGGTTTTTCCGTCAGTGATTCCTCTGTGCTATGCAGTGAGCACTTCAGGGAGCAGGACTTGGACAGGACAGGTCAGACTGTCAGGGTCAGAGATGGAGCTAAACCATCTGTCTTCAATTTCCCGGCTCATCTACAAAGACCAGTGTCAACCAGGAAAACAAGAACCTCAAGGAGGGCTGAAGAGAGCCTGTCAGTAGACTGTTCTCTGCAGTTACAAGAGACTAAACCTCTGCCTAACGTAGACCACTCCTATGCATTGCCAGCAGATCCCACTGGTCTAAAGGCCAGACTCAGTGAAGCCTTGGCTAGAGTGGAGAGTCTGGAGAGGGACATGAGGAACGTGAAAAAACGAGAACAAAGGGCAAAGAACATAGTGCTTGCTCTTCTACAGGATCTGAGTGGAAAGAACCTCATAGATGAAGAGCTGGAACACAAGCTCAATTTCTACACGGGGAAAATTAAAATTCTATAAAATGTTGAACTTTATGTATATTTCATGTTTGCATCTTTCCATGTTTCTATAAATTCCTAGTTATTATTTCAAAGGGAATTTAAGGATTTGCCTGTGCTTACTGAATTTCAAATCTTCTGATTGACCTCCTTTCAAAACAGGGCCAAGAGCTCAAAACAAACTATCCACATACATGGTCCAAAAGCATTCAACTGTCTAAGAGAATCTTTTCTTTCTTGACCTCCCACATCCAATACATCGCAAAGTTTTTTTTTTTTTTTTTTGTGTAATTTGATAAAATTCTGCTTCATTTTACAAAGGTGGATGCCAAGCCTCAACATGATGTTAGATATGTTGATATGTATATGTGATATTGATATGTAGTTTGCAAAGTCAACACTTTCTTTAATGTTGCGTGTATTCATTTCTCAAATGAACAGTTTATTTGTGACATATAATTTGGAAGCCATGTCTTATGCATGCATTTCACATTTGTGTTTTTCTAATTATGTGTAAATGGATAAGTATGAATAAA

Function

NR:

description
LOC553397 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_08692653_08694052.mRNA True 1120 mRNA 0.40 4 8692139 8694052

Neighbor

gene id symbol gene type direction distance location
CI01000054_08652832_08667152 NA coding downstream 23210 8652789 ~ 8668929 (-)
CI01000054_08574533_08590975 NA coding downstream 100847 8574480 ~ 8591292 (-)
CI01000054_08425960_08439362 NA coding downstream 252709 8425943 ~ 8439430 (-)
CI01000054_08400578_08406066 NA coding downstream 286073 8400531 ~ 8406066 (-)
CI01000054_08375424_08376756 NA coding downstream 315159 8375071 ~ 8376980 (-)
CI01000054_08710955_08718087 HDAC1, HDAC2.S, HDAC2, HDAC1.S coding upstream 16735 8710787 ~ 8718087 (-)
CI01000054_08721571_08723333 NA coding upstream 26956 8721008 ~ 8724208 (-)
CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding upstream 243260 8937312 ~ 8942587 (-)
CI01000054_08953766_08966617 TMEM57, TMEM57A coding upstream 258082 8952134 ~ 8966617 (-)
CI01000054_09077309_09080163 NA coding upstream 382779 9076831 ~ 9080812 (-)
G234935 NA non-coding downstream 1544 8690311 ~ 8690595 (-)
G234926 NA non-coding downstream 50964 8640541 ~ 8641175 (-)
G234911 NA non-coding downstream 93740 8598104 ~ 8598399 (-)
G234899 NA non-coding downstream 119461 8572436 ~ 8572678 (-)
G234936 NA non-coding upstream 11702 8705754 ~ 8706067 (-)
G234946 NA non-coding upstream 39359 8733411 ~ 8733740 (-)
G234969 NA non-coding upstream 72393 8766445 ~ 8766674 (-)
G234982 NA non-coding upstream 102137 8796189 ~ 8796582 (-)
CI01000054_07165957_07169539 HEYL other downstream 1520466 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 2038126 6628082 ~ 6642160 (-)
G232274 NA other downstream 3482899 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 4019906 4670151 ~ 4681361 (-)
G231645 NA other downstream 4709316 3981847 ~ 3982823 (-)
G235216 NA other upstream 553987 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 789095 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1169269 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2109819 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2177052 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location