G235582


Basic Information

Item Value
gene id G235582
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9582422 ~ 9664231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267193
GGTGGAATCAGCCTACAGCCTTTATTGCACATTCCTGTTTGGTTTTGCTCTGACCACATCCTGGCATGATGTTTATGCAGTGCAGAAAACACATTGTCTTGTAGTTTTACCTTTCACCCTGTGAAAGCCTGAGATCACTACATATACCAGACTCCTTTCAATTCAGGTACATATATTATATTTTTTCATTTATTTTTCTTTCTCTTTTTTATCATCAGTGACAATGCCTGCAACATGCTTCAAAATCTTCATTTTGGCAAACTACAAATAAATTAAAACACATTCATAGAACACAATTTGACATTTAAGGACATTAATAAAGAAAATCAGGACAAACTGAACAAACGAGAAAAAAAATACAAAGAAGCGGCTTCTGCTCTTTTTCATTACTTTCTTGCTTTTTTTTGAAAAAAAGAAAAGAAAAAGAAAACAAGTTAGCTAGCTAACAATCACAGACCACATGCAGATATAATACAACAGAATCATCTCACTCGTTTGGACGATTAACTCTGTTAGTTAGTTTCTGCAAACTACTGATCTAAACTATATCACAAAATTATGCTTTAAACCGGAAAACATCCAATTTCGCGATATTTTTGACTGGTTATAATAAGTCCTTGGTATAGTATCTCCTCTCGCTAAATAGGAAAACACACAACCACTTCTTAATGTCCAAACAGAGTCTGGAGAAGACCAAATGCACTTCAGTAGTGATAAGAGATACCATCTGCGACCAGACACAGAAATCTGCAATAAGCCACCCATGAGGGTTTACGCATGTTTTTACAATCACTGCAGTGATACGAACATGAATTAGGTTCTCCGGTGATCAACATGTATTTAATTTCGATGACCAGGATAAAATGATCATTGTATACAGCAAAATGTAGTGCTTTCCATCGGAGTGAAGAACTAGACACTCACTGTATTGGATAACCTTAATATCAATAACAAAAAAAGCTACTAGACAGAAATAAATATCAGTAACGGATCAACAGTGTTGTTTCGCTTTCATCTTCCAGGGCATCAGCATTTGCAGTTTTATCATTTATACATCAGTGTCTTCGTCCTTTTTTAAAATTAATTAGCAGCTTCTCATCTGACATTTGAAATCGTCAGTAATAGCAGAGAGTCTTTCTACTGAGAGCGCAGCAGTTACAAACAGGAAAACACACAAGGAAATGGTGACAAAGTACATTAAGCATTTGGCACATGCTGTTTCCATGTCTGGAGAAGACTACCCTCAAAATATCATATGAAACGGCATCTCACAACAAGGAAATATGATTTTTCCAACCTTGAAGCATCATTTTAAGGGAATATTTTTCACCCAAAAATGTCATTCCAAACCTGTATGACTAACACTCTTCTGTGGTACATAAAAGGAGACATTTTGAAGAATGTAATGGTCGTTCTTTATATATGGTCGTTCTCCATATAATGACAGTGGATGTGGATTGGGCCTGTCAAGCTCCAAAAAAAGACAAAAAAATCACCATAAAGTATAATAATATTGGTCAACAGTTGCGTACGCTATATTCTAGTCTTCTGAAGACATGATAACTTTGGGTGGCCAACAAAATCCAAAATCCCATAATAAGTGGGATCTTGTATTAATCTTCCCATTCGCAGTAGCTCTCATACAGTATTTATTGGCATTCCCTGTTGAAAAAAACAGCATATGCTGGCCAGGTATGGTAACCCATACTTGGAATTTGTCCTCTGCATTTAACCCATTCAATTAGTGCACACACATTAGGAGTAGTGAACACACACACACAGCAAACTGTGGACACACACACCCGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267193 True 1808 lncRNA 0.36 2 9582422 9664231

Neighbor

gene id symbol gene type direction distance location
CI01000054_09531778_09544007 NA coding downstream 37912 9531510 ~ 9544510 (-)
CI01000054_09495785_09497239 IRX4B, IRX4 coding downstream 84740 9495450 ~ 9497682 (-)
CI01000054_09488559_09488870 NA coding downstream 93552 9488276 ~ 9488870 (-)
CI01000054_09483912_09484282 MRPL36 coding downstream 98140 9483147 ~ 9484282 (-)
CI01000054_09453616_09482480 LPCAT1 coding downstream 99699 9452109 ~ 9482723 (-)
CI01000054_09686420_09705911 NSUN2.S, NSUN2 coding upstream 21816 9686047 ~ 9705911 (-)
CI01000054_09812111_09813425 NA coding upstream 147627 9811858 ~ 9813501 (-)
CI01000054_09831831_09832148 NA coding upstream 167527 9831758 ~ 9832148 (-)
CI01000054_09841097_09848347 ATAT1 coding upstream 176783 9841014 ~ 9848892 (-)
CI01000054_09864693_09866871 PPP1R11 coding upstream 200052 9863321 ~ 9867212 (-)
G235575 NA non-coding downstream 5546 9576594 ~ 9576876 (-)
G235368 NA non-coding downstream 22519 9556764 ~ 9559903 (-)
G235350 NA non-coding downstream 55155 9526848 ~ 9527267 (-)
G235308 NA non-coding downstream 140571 9437469 ~ 9441851 (-)
G235298 NA non-coding downstream 181856 9400361 ~ 9400566 (-)
G235641 NA non-coding upstream 6567 9670798 ~ 9671024 (-)
G235642 NA non-coding upstream 7797 9672028 ~ 9672418 (-)
G235643 NA non-coding upstream 8829 9673060 ~ 9673526 (-)
G235645 NA non-coding upstream 10225 9674456 ~ 9674878 (-)
G235646 NA non-coding upstream 10787 9675018 ~ 9675243 (-)
G235216 NA other downstream 333884 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 2410749 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 2928409 6628082 ~ 6642160 (-)
G232274 NA other downstream 4373182 5206199 ~ 5209240 (-)
CI01000054_10817235_10819181 TAC1 other upstream 1139640 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 1206873 10871104 ~ 10881495 (-)
G236748 NA other upstream 1620963 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 2114659 11778890 ~ 11781880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2308198 NA non-coding NC_050572.1 CM025859.1 22611264 ~ 22614686 (+)