XLOC_014932 (sla1a)


Basic Information

Item Value
gene id XLOC_014932
gene name sla1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34913855 ~ 34927201 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029455
AGAACACTGCCGGCCTTCGATCTGAGAGCAGGACAGACGATTCTTTACTCCTAAAAAACACCTGCTTCAACTTTACTGGGAGCAGCCAGACTGAACTGAAACATTGCCTTCTGGAGGAAACATGGATATTTAACTGCGTCAAGTGAGAGCATCAGTAGAGCTGTGGGCTCTGACCTGCCACCATGGGTAACGTGACAAGGCAGGGACACACAAATCCAGAGTCAAACAGCTTGGACAGCATGTTTAAAGACTGCGACACTCTTGTGGTGCTCGCTGATTATCCATGCCGTGATATCAGCGAACCAGTTTTTAAAATGGGCGACAGACTCAAAGGTCTTTCAGAAGATGGTTGCTGGTGGAAAGTTCGTTCCCTTCAAACAGGAACTGAGAATTATATTCCATGTAACCATGTGTCAAAGGTCTATCATGGATGGCTGTTTGAGGGTGTCAGCAGACAGAAGGCAGAAGAGCTTTTGTTGCTGCCTGGCAACAGTGCTGGATCATTTCTCATTAGAGAAAGTCCGAGAGAGAGAGGTTTATATTCTCTCTCTGTGAGACACAGGAGCGTTAAGCACTATAAGATCTTCCGTCTGACTAACAGCTGGTACTACATTTCACCACGGCTTACCTTCCAGTGTCTGGAGGACATGGTCAATCACTACTCTGACTCGTCTGATGGTATATGCTGTGTTCTTAGCGCTCCATGTCTGGCTCTGTCAAACCCGACGCCGAGCTCAATCCAGGGAGCTCCTCCTGTAGTAATGCGTCGAAACCTGGATTGGAACAAAGTGAAAAAGTCACAATTATTAAACCCAAGTGAACTGGACAGCGTAGACAGCAGAGACAACATGATGAGCTACGGGGTGAGAAGCAGCATAGCCGCTTATCTGTCTTTAACATCAGTGTCTGAGCCAGAGGAAGCCAAAGGCCGCAAGAAGAAGAGCAAGTCTATGTACGTCATGTCTGACCACAGTAATATGGATTTAGATGAGAACTAATCCGCTAACACATTGCAATGGACTTAATATTTTTGCACTGGATTGGGTGATCTATTTGCATACATGGAGAGGTCACATTTCATGTCTGTTTTTGGAATAGTTTACCATTTTGGTTAgccttttttttggcttttttatttcaatttttctCTGTGGTGTTTAAAAgagctttttttaaatgcaatgcaaaaaGTTTTCAAGCGTGAAAAGGATAAAAGTGTAATACAGATTTTGTTTTGTATATTAGAAATGTCCTGTTCAATTAGCTTTCAACCATTATCGCCATGATTTACAGATCGACTCTGTCATCCGgtgtataaaaaatgttaataaattatagacccttttcaca

Function

symbol description
sla1a Predicted to enable signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in cytoplasm. Predicted to be active in dendritic spine and focal adhesion. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in macrophage. Orthologous to human SLA (Src like adaptor).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005925 focal adhesion cellular_component
GO:0043197 dendritic spine cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050904-3 Predicted to enable signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within regulation of signal transduction. Predicted to be located in cytoplasm. Predicted to be active in dendritic spine and focal adhesion. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in macrophage. Orthologous to human SLA (Src like adaptor).

Ensembl:

ensembl_id ENSDARG00000054340

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029455 True 1350 mRNA 0.43 8 34913855 34927201

Neighbor

gene id symbol gene type direction distance location
XLOC_014931 ctnnal1 coding downstream 40289 34751687 ~ 34873566 (-)
XLOC_014930 elp2 coding downstream 171415 34691645 ~ 34742440 (-)
XLOC_014929 NA coding downstream 226303 34660712 ~ 34687552 (-)
XLOC_014928 NA coding downstream 630847 34281886 ~ 34283008 (-)
XLOC_014927 NA coding downstream 683570 34188192 ~ 34230285 (-)
XLOC_014933 ndrg1a coding upstream 32766 34959967 ~ 34979837 (-)
XLOC_014934 si:rp71-45k5.2 coding upstream 67232 34994433 ~ 34995629 (-)
XLOC_014935 zgc:113424 coding upstream 70828 34998029 ~ 34999379 (-)
XLOC_014936 si:rp71-45k5.4 coding upstream 74052 35001253 ~ 35010342 (-)
XLOC_014937 bmp8a coding upstream 92103 35019304 ~ 35035857 (-)
XLOC_014711 CR382300.3 misc downstream 15185100 19728690 ~ 19728755 (-)
XLOC_014924 CU928445.1 non-coding downstream 935861 33977878 ~ 33977994 (-)
XLOC_014920 NA non-coding downstream 1127152 33782783 ~ 33786703 (-)
XLOC_014942 BX957241.1 non-coding upstream 493634 35420835 ~ 35420951 (-)
XLOC_014948 NA non-coding upstream 1783297 36710498 ~ 36731093 (-)
XLOC_014949 NA non-coding upstream 1901750 36828951 ~ 37120328 (-)
XLOC_014951 BX571837.1 non-coding upstream 2300709 37227910 ~ 37228025 (-)
XLOC_014953 NA non-coding upstream 2595376 37522577 ~ 37569033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_05875546_05877938 SLA1 coding CI01000054 null 5875479 ~ 5878322 (+)