CI01000054_05875546_05877938 (SLA1)


Basic Information

Item Value
gene id CI01000054_05875546_05877938
gene name SLA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5875479 ~ 5878322 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05875546_05877938.mRNA
GTATAAAGTGAAATATGCATTTAAAATTCCAGCATCTGTAGAGCTACAGGCTCCATAACCTGCCATCATGGGCAATGTGATGAGGCAGGAAAAGCCAAACCCAGAGCCTAACAGCTTTGACACCATATTTAAAGACTGCGACAGTCTTGTGGTGCTTGCTGATTATCCGTGTCGTGACATTAGTGAACCTATCTTTAAGATGGGGGACAGACTCAAAGGTCTTTCGGAAGATGGTTGCTGGTGGAAAGTGCGTTCTCTTCAAACAGGAACTGAGAATTACATTCCAAGTAATCATGTGGCAAAGGTTTATCATGGATGGCTGTTTGAGGGGGTTAGCAGGCAGAAGGCAGAAGAGCTTTTGTTATTGTCTGGTAACAGTGTCGGATCATTTCTCATTAGAGAAAGTCCGCGTGAGAGAGGTGTATATTCTCTCTCTGTGAGACACAGGACCGTGAAGCACTATAAGATATTCCGTCTGGCTAATAGCTGGTACTACATCTCACCACGACTTACCTTCCAGTGTCTAGAGGACATGGTCAATCACTACTCTGACTCGTCAGATGGTATATGTTGCGTTCTCAGCGCTCCGTGTCTGGCTCTATCCAACCCAGCCCTGAGCTCAACCCAGGAAGCGCCACCTGTGGTAATGCGCCGTAACTTGGATTGGAAGAAAGTGAATAAGTCACAGCTGTTGAGCCCAAGCGGGCTGGATCCTGTGGACAGCAAAGATAACATGATGAGCTATGGGGTGAGGAGCAGCATAGCTGCCTATCTGTCTTTAACATCAATACCTGAGCCAGAGAACGCCAAAGGCCGCAAGAAGAAGAGCAAGTCTGTCTATGTAATGCCTGATCACAGTAATATGAATTTAGAGGAAAATTATTAGCTTTATGACCATAGATTTTTAATTTACACAATGGCTATGAAGTTGGTAATATTTTTGGATTGGACTAGTCAAATCTTTCACATGCATGTCCAGGTCACATTTCACCCTAAAATCAAATTGCATAAAAGAGAACCTATTTTAGGACCATTATTATTGTTTTTGTTTTGTGATAATTTCCATGAAATTTTCTGTAATGTGTTTGGATGTTGCACTTTTTTTAATATTCCAATTATTCTCATTGGTGAATCATTAGATTCTTATTAATGCAATACAGTGACTTTTTTTTTTTTTTTTTAAATATAAAACAGCACATATTAATGGAAATACAACATATACTACTGTGATATGTAAATATTTTCCATTTAAATTCAAATTGTGTCAAAA

Function

symbol description
sla1 Enables cargo adaptor activity and ubiquitin binding activity. Involved in actin cortical patch assembly; endocytosis; and negative regulation of Arp2/3 complex-mediated actin nucleation. Located in actin cortical patch and nucleus. Part of SLAC complex and actin cytoskeleton-regulatory complex.

NR:

description
SRC-like-adapter

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05875546_05877938.mRNA True 1270 mRNA 0.40 7 5875479 5878322

Neighbor

gene id symbol gene type direction distance location
CI01000054_05841632_05851621 NDRG1A coding upstream 22952 5841496 ~ 5852527 (+)
CI01000054_05830867_05831873 NA coding upstream 43526 5830809 ~ 5831953 (+)
CI01000054_05825039_05827325 PSMA2, PSA2 coding upstream 48101 5823806 ~ 5827378 (+)
CI01000054_05813838_05819498 BMP8A coding upstream 55739 5812764 ~ 5819740 (+)
CI01000054_05772612_05808901 MACF1, MACF1A coding upstream 66113 5772452 ~ 5809366 (+)
CI01000054_05926683_05953807 CTNNAL1 coding downstream 48361 5926683 ~ 5953955 (+)
CI01000054_05957906_05981499 ELP2 coding downstream 79077 5957399 ~ 5982222 (+)
CI01000054_05989042_05989389 NA coding downstream 110720 5989042 ~ 5989795 (+)
CI01000054_06292147_06297237 NA coding downstream 413654 6291976 ~ 6297560 (+)
CI01000054_06305908_06312122 NA coding downstream 427586 6305908 ~ 6312163 (+)
G232532 NA non-coding upstream 2624 5872373 ~ 5872855 (+)
G232530 NA non-coding upstream 5056 5870198 ~ 5870423 (+)
G232526 NA non-coding upstream 8390 5866867 ~ 5867089 (+)
G232521 NA non-coding upstream 15602 5859620 ~ 5859877 (+)
G232519 NA non-coding upstream 36605 5838283 ~ 5838874 (+)
G232539 NA non-coding downstream 11472 5889794 ~ 5890005 (+)
G232545 NA non-coding downstream 16426 5894748 ~ 5894967 (+)
G232501 NA non-coding downstream 39737 5918059 ~ 6346633 (+)
G232606 NA non-coding downstream 256195 6134517 ~ 6136029 (+)
G232648 NA non-coding downstream 407943 6286265 ~ 6287079 (+)
CI01000054_05608892_05634793 RNF19B other upstream 250804 5608457 ~ 5634804 (+)
G231863 NA other upstream 1424749 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1961933 3848427 ~ 3914231 (+)
G230689 NA other upstream 2788087 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 3571097 2289802 ~ 2330981 (+)
G232558 NA other downstream 115338 5993660 ~ 6041863 (+)
G232659 NA other downstream 496528 6374850 ~ 6375894 (+)
G232870 NA other downstream 1009590 6887912 ~ 6888503 (+)
G233024 NA other downstream 1689201 7567523 ~ 7609893 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014932 sla1a coding NC_007130.7 CM002903.2 34913855 ~ 34927201 (-)