G230689


Basic Information

Item Value
gene id G230689
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3078502 ~ 3087392 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261835
AGAACAAACTGCACTCTTTATTGAAAATGTACATGTAGTATTTTAAATGTTAATGGCACAGAACACAGCCATAGAAAGATCAGAACAAATTTACAATATTTCACCAGCATAACACAAGTAACATGACAAGATAAAGACTAATAAGAAAGGGGATTACATGTTGGCAGCACTAAGCCAGTGCTGACTTCAATGGTTTTATTAAACCTATTAAGAATACAAAATAAAAATAGGACGAAAAAAAATCTTGCCACAAATGGGATGAGTTTTCAGGCTAAAATTGCAAGAAAATTCTTTAAACTTAAATACATCAATTATGACTCCAGAATCGAGCCTCTGGAATTCCACATACAAACTTTGCTTTTAAAGTGCCAGATCAGAAGCGTGGCTTCTTGGCAGATCCATCATATTCCTCACGGACCCTGCCAAATCCTGGGTTTCCAGCACCCATGCCCCTTGGACCACCTGGCCCACCTTGCGGGAAACGCTCATTGCGCATTTCGTTGGACACCATGCCCCCTGATGCTTGTCCCCCCATTCCTTGGTGACCTTCAAAATTCATTCCTGCCAATGGGAACTTCTGGCTAGGTGACCCAAACGGCATATCAGCCAATCCAAGGCCTCCACTAGAATTCATTCTCATCTCCCTGTCTCTATTATCCATAAAGCCACCCATTCTGTAAGACTCCTCACGTTTGCGCCTCATCTGATCTTCAATTTCCCTCTGCCGCATCATCTCCTCCTCTCTCCTGCGGCGTTCCTCTTCCTGCCTGAGTTGCATTTCTTTACGTTTCTGCATCTCCTGACTGTGCATTTCTTCCATACGACGAAGTTCCTCTTGACGTCTAAGAAGGTCCTGTCTGAGCATGTTTGCTTGATGCTCATGATAAGCATCTTCCATCTCTGCTTCTAGCTTCTCACGGGCCTCACGAATGTTTTTCTCCACTTGCTGCCTCTGTTGTTTCTCCATCTCATCAAGGGACTTCCATCGCTGGGAGTATTCAAACTCAAAGGTGCCAGGACGGGCGAACCGAGGAGGCTGATCTCGCTCCTTCTGATAACTGGGGTTCTTCTGTGCAAGCTTCTCTGGCAAACCATCCTCATCATCATATTGCTCTAACAATTCAACCACAATTGGACGGGGTGACGATGTGAGAAGGAACACTCCATCACTGATACGATCAATAGCCTTCCGTGCAGCTGGTTTGGAAGAAAACTCAACAATGCCTTTCCCTGTTGAGCGGCCACGGTCATCTACAATAACTACAGCCCTCTCCACCACTCCAAACTGAGAGAAGGCCTCTTCCAGCAGTTCATTGGACACAAATGGAGATAAGTTGCGCACAGAAAGTGCAGCAGAATGAGTGGCAAAACGAACTCTGAGAGGCCTGCCTTTCATGGGAATATCATCCAGCTCAGCTTTTGCAACCTCTGCCAAGGCACGGGATTCCAGTCTGATGAATCCAAAACCTTTGCTTTGATTGATGAAAATCTCACTGGGCTCCCCATACTTTGCAAACAATTTCCTGAATTCGGGTTCAGTGATGTCGTTTGGTAGGTTCCCAATAAACAGACGACAACGCTGAGTATAGGTTTTCTCTCCAGGCTTGCGCAGCAAAGATAGCGTTGCCTTCAACTCCTAAAACCAAAAATTACACAATAAAAACCCAAGTCTGCTTGTAAATCTATCGTGGGGCTCAATTTGATCGACAAATTGCAAATGCTACTTCACAATGCTTGCGAACGGTCTCACCTACAACGCAAACGCATTCATGACCTAAATTTATCAAACTAGGCCACACTATAACATCAAAATTATAGCAAAACACGTTCATAACGCGAAATAAACGTATAAAAACATCTAATTTAATGCATTTTATACGGACAGAGTTACAAAAGCACTGTGGGACCAGTAGGGAGTCCAACCTTTGTTTAAGTGTCTACAAAATGGCGGATCTGCCTCGGCAAACACGTACTAAAGAAAATGTGTTTTAAATGTGTAAGTTTATAAATGTAACTTACTCAAACCGCTCATATACACTCACTAAACACGACACTTATGTTTTTCTAAGAATTACGTTGTTTTACCTGAGGCTGAATGCCCTCATTGCTCGTGGTGCTCTGTTGTTGCGGTGGTACTGTCTTTTCCGGTTCTTTCTGCACGGGAACATTTGGTTTTTGACCATTCCCCATCCCACCTTTTGGTTGGTTTTTTCTGAGCTGGTTCTGTGGGGAACCGAGGTCTGGGTTCTTCGCATTATTCTGTGGCGGTGGAGACTGGATCTTCTGTGGAGGTGGGGACTGGATCTTTTGTGGCGGTGGGGACTGGATCTGCGGCGGAGCAGCGATGGCGGTCTGCTGTGGCGAAGGGCCTTTGTTGTTGCTCTGCTGGGCCAGACCAGGGCCTTGCGCCGGAGGTGACTGGACCACTGGCTTGTTCTGACTGGATTCCTGCGGCTTCTGTGGTGTAGAGGCCTGGCTGGGCTGATTTCCCTGATTCGGCTTAAATCCGCCACCCATATGGGGTCCTCGGTTTTGATAAGGATGCTGGTTTTGATTTCTAAAGTTAGGGTTTCCCATTCCACCACGCATTCCCATTCCTCCGCGGCCTCGGTGCTGGAATCCTCCACGGTTACGGGAGCGGTCACGAGACATTTTCACACAAGCGGACAGAAAAACAGTTTAAAAAGCCTTTTGAGGGTGATAGATCAGGTTAAATAACGCACTATATTCAAAACTAACGATAAATGCCGACGAGGAGTGGATAACCTGCACTCTCAACGCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261835 True 2784 TUCP 0.46 9 3078502 3087392

Neighbor

gene id symbol gene type direction distance location
CI01000054_03016199_03016501 NA coding upstream 61809 3015959 ~ 3016693 (+)
CI01000054_02975008_02985278 EFCAB1 coding upstream 93167 2974588 ~ 2985335 (+)
CI01000054_02951289_02967370 NA coding upstream 110842 2950915 ~ 2967660 (+)
CI01000054_02824071_02824355 NA coding upstream 253860 2824025 ~ 2824642 (+)
CI01000054_02652696_02685815 CALCR coding upstream 392669 2652696 ~ 2685833 (+)
CI01000054_03424472_03425704 NA coding downstream 335662 3423054 ~ 3426433 (+)
CI01000054_03558982_03663042 ADGRB2 coding downstream 471590 3558982 ~ 3663042 (+)
CI01000054_03670684_03671857 NA coding downstream 583292 3670684 ~ 3672003 (+)
CI01000054_03707961_03761024 ADGRB2 coding downstream 620443 3707835 ~ 3761112 (+)
CI01000054_03848427_03914231 NA coding downstream 761035 3848427 ~ 3914231 (+)
G230856 NA non-coding upstream 21283 3056864 ~ 3057219 (+)
G230700 NA non-coding upstream 75385 3001195 ~ 3003117 (+)
G230697 NA non-coding upstream 78483 2989009 ~ 3000019 (+)
G230705 NA non-coding upstream 114493 2933908 ~ 2964009 (+)
G230695 NA non-coding upstream 164926 2910956 ~ 2913576 (+)
G231015 NA non-coding downstream 52001 3139393 ~ 3139663 (+)
G231209 NA non-coding downstream 271879 3359271 ~ 3359533 (+)
G231270 NA non-coding downstream 317825 3405217 ~ 3405519 (+)
G231273 NA non-coding downstream 323207 3410599 ~ 3410925 (+)
G231286 NA non-coding downstream 345916 3433308 ~ 3433582 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 774120 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 1351709 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 1416937 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 1496433 1578022 ~ 1579356 (+)
G229936 NA other upstream 1671372 1397080 ~ 1407130 (+)
G231863 NA other downstream 1319760 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 2535623 5608457 ~ 5634804 (+)
G232558 NA other downstream 2906268 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 3216915 6305908 ~ 6312163 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location