CI01000054_05608892_05634793 (RNF19B)


Basic Information

Item Value
gene id CI01000054_05608892_05634793
gene name RNF19B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5608457 ~ 5634804 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05608892_05634793.mRNA
CTTTAAATGCCCCATTTTTAATTGACAGTATCTGTCAGCTTTTTAGTCCGTAACAAATTTGGGGTGCAACAATTTGCTTTTGTTTCCTGGTTTCTTTTTCTTTTTTTACATTTCGAAGAAGATCGTTGGAGTGAAAGGAAATTTTTTTTCCATCCTGGCTCAATTTGTCTAGTTATTTTTCCGTTTATTGTTTAATCACGACTCCCTGTTATAGTTGAGAGGAAGAAATGACTTCATGAATGGAATTCTCCCAACGGGGAAACTAACTGGAATTTGTTGAGACCTTGACAAACATTCTTTTGTGTATCTGGAGTGTTTGTGTTCTTGAGGTTCATCGAAATCATTCTGTGGAAGGAACCAAGGTGCCTCGCCAGAACTCTCTGTGACCTCTCTAAGGACTCAAGTGGGAGAACATAACAAGGTTGTTCTTGGGAAATGGGATCTGAAAAGGACTCTGAATCACCCCACTCCTCTGTTAGTGGCATTCCCAATCCGAAATGCCGTGGGCCTGGTAAGAAGCAAGGCAGGATCTCTTTTCATAGTCTCTTTCATGGCAAACGCGGATCCAGGGGAAACAAGGCTAATGTTGGCACTCCTCTTGCGCAACAGCTGCACCAACAGCAACAACTCCAGCAACAGCAGCTTCTCCAGCCTCCCACACCCACAAATGTTTCATCAGACCCATCTACGGCAGGCCCGGCCGAGCCGTTATCCGCCAGCCAGGCCTCTTTGGGAGGTCAAGAACTCCTAGAGTGTCCCTTGTGCCTGGTGCGTCAACCTGCGGAGCAGCTTCCTGAGCTCCAGGGATGCAGCCACCGGTCTTGCCTGTGCTGTCTAAGGCAGTACTTTCGTATCGAGATTACGGAGAGCCGAGTGCAGCTCAGCTGCCCGGAGTGCGCCGAGCGACTTGCCCCACGGCAGGTGGCCCTCATCTTGGACGATCCCAACCTGATGGAAAAGTATGAAGAGTTCCTGCTGCGCCGCTGCCTGGCATCGGACCCTGATTGCCGATGGTGTCCCGCTCCCGACTGTGGGTCAAAACATGCACTTAAAATTAAAGGGATTGTTTTTGTCACGCATAAGCGAAACTTAGACAATAAAGCTGGGGTCGAGTTTTACTTTAACTTGAAGGGAGAAATCAGCTTTTTCCACCCCAGTTTTGCAGTCATCGCTTCTGGATGTGCCAGCTGCCCCAGGCTGGTGTGTCGAAGAGAAGGGTGTGGTGCTGAGTTCTGTTACCACTGCAAGCAAGCTTGGCATCCTAACCAGACCTGCGACTCTGCCCGCCAGCAGAGAGCCCTGTCCTTGAGAACACACAGTAACCATTCACCCAGCTACACGGCCGAGCAGGGGCACACTGATGACATCAAGCCTTGCCCCCGATGCGGTGCCTACATCATCAAGATGAACGACGGCAGCTGTAATCACATGACCTGTGCTGTGTGCGGCTGCGAGTTCTGCTGGCTCTGTATGAAGGAGATTTCAGACCTGCACTACCTCAGTCCATCAGGTTGTACATTCTGGGGAAAGAAGCCATGGAGTCGCAAAAAGAAGATTCTGTGGCAGCTGGGCACTTTGATTGGTGCACCTGTGGGCATCACTCTAATCGCTGGCATCGCAGTTCCTGCTATGGTTATCGGCATCCCCGTTTACATTGGACGCAAGATCCACTCACACTATGAGGGCAAGAAAACGTCACATCACAGGAGGAATCTCGCCATCACTGGTGGTGTGGCTCTTTCAATCATTACAGCTCCAGTCATCGCTGCTGTCAGTGTGGGCATTGGTGTTCCCATCATGTTGGCGTATGTGTATGGTGTTGTGCCTATCTCTCTGTGCCGCGGCGGGGGCTGTGGGGTGAGCCGGGGGAAAGGTCGTGGTGTAAGGATAGACTTTGATGAGGATGACGGGCCTATTACTGTTGCTGATGCATGGCGAGCGCTGAAGTCTCCCAGCCTGGGCGAGAGCAGTTTGGAGGGAGGAGCCAGCGGCCTCAGTACCACCTCTCCGAGCGAGGGCCTATCCGTCGCTCCAGGTGGTCTGGGAGACACGCCACATTTCAACACACTAGCGGGAGGAGCACTTGGTGCGAGGACAGGAAAATACAGCAGGCTGGAGGTGCAAGGAACTGAGCTGGGAAAGGAAAGTGCCGGCAGGGAGACAGGCAGCTTGGGAGCGGCCAGTGACTGTGCAAGCACAAGGGGCATGGCAGGATCAATCACTTCCTCTTACACCTTACCTGACAGAGAGGGCACTAACCTCGAGATCCAGGTGGACATTGAAACTAAACCAAGCCATCTGTGTCTAACCACTGAAGAGGATCTGGCTCCGCCTACTGCTGCCATGGTGCCCAGCTCGGGGGAGGAGCCACAGGACTGCAGTTCCCGCAGAAGCGGGGTTGTCGTGGATTCCTCTCTGGGCCTGTCACCAGGAATGTCACTCAGGGAGGGTCTCCGAGACGTCACCCTCGCTCAGCCGGAAAGCATCCGCAGCGACCTGGAGATGTCCGACACGCAGTCGGATGACATCGCGGAGCTCACATCCGACGACTGCGACTCGCCCCGACCCAAGAGCTGCCACGCCGCGCCCCCTCCGCAGACGACCTGCAGAGCCTTGAACCCCACCGACAGCCTGCACTGTCCCGACAATGTCATTCTTTACGTAATCATGCCGTTCGTTGACCTCCAGTCAAAGCTTGGGATTAATCTGGACCAGTGGCTCTTAGCTCAGAGTGGGGAACAGCCACAGAAGCGGGCCGCTCGCTGCCATGCCTTTCAGAAGGAATGGATAGAGTGCGCCCACGGCATCGGCCAGAACCGGGCCAAAAAGGAGTGCAATCTGGAGTTGGAAGATTTCTATGAGTGCTTGCACCGCCGAAAGACTCAACAACGCTTATATGAGATCCGTAAGCAGAAGGAGAAGATGATTAAAGAGGGAATGTACACTCCCCCTCCGCACCACTCAGGCAATGAAGAGCCCCCTGGTGAGATGTCTTCCTCGGACGAGGAGAGCCTGAGCGAACGTTCATGTGTGAGCGAGCGTTCGTTCCGCAGCGAGAGGTCTGGAGGCTCTCTCTCGCCCTGTGCCCACAGCGCAGCTGGGCCCAAAGGGGACACTCTGCCATGGAACCTATCGAAACATGAGAGACGCAAGCGCAAGAGCCAGGACTCAGTGCTGGACCCCGCGGAGAGGGCGGTTGTGCGAGTCGCAGCAATCTGGCAAGTTGGAAAGGAAGACATGCAGTGGTTTTTATATACATTAGTGTTCAAGATTGATACATGCAGCTGCATGTGGATCAAGTTTTGTGAAATAAACTGTAATTTGGCTCGAGTGGGAGAAGAGAGGCCAAATGTTGGGAGCCGAACTGTTTTGAGACCCTTATTAGACTTGCTGGCTGTTGCTCTAGCTTTTCCTGCTGATTTCATTACTCCTGACAGACCGTGTCTGTGTTTCTAACCAATGCTGAA

Function

symbol description
rnf19b Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human RNF19B (ring finger protein 19B).

GO:

id name namespace
GO:0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity molecular_function

KEGG:

id description
K11973 RNF19B; E3 ubiquitin-protein ligase RNF19B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05608892_05634793.mRNA False 3467 mRNA 0.53 14 5608457 5634804

Neighbor

gene id symbol gene type direction distance location
CI01000054_05595391_05599507 AK2 coding upstream 8762 5594953 ~ 5599695 (+)
CI01000054_05579068_05592326 ANLN coding upstream 15954 5579068 ~ 5592503 (+)
CI01000054_05567094_05576916 PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2 coding upstream 31434 5567094 ~ 5577023 (+)
CI01000054_05538535_05543989 COL8A2 coding upstream 63423 5537408 ~ 5545034 (+)
CI01000054_05409518_05413525 NA coding upstream 194470 5409302 ~ 5413987 (+)
CI01000054_05642130_05679022 NA coding downstream 6322 5641126 ~ 5682561 (+)
CI01000054_05696772_05708538 NA coding downstream 61545 5696093 ~ 5708637 (+)
CI01000054_05713420_05771550 MACF1, MACF1A coding downstream 78616 5713420 ~ 5771745 (+)
CI01000054_05772612_05808901 MACF1, MACF1A coding downstream 137648 5772452 ~ 5809366 (+)
CI01000054_05813838_05819498 BMP8A coding downstream 177960 5812764 ~ 5819740 (+)
G232467 NA non-coding upstream 134124 5474045 ~ 5474333 (+)
G232443 NA non-coding upstream 189588 5418632 ~ 5418869 (+)
G232379 NA non-coding upstream 207345 5400368 ~ 5401112 (+)
G232368 NA non-coding upstream 250785 5357241 ~ 5357672 (+)
G232293 NA non-coding upstream 347695 5259996 ~ 5260762 (+)
G232519 NA non-coding downstream 203479 5838283 ~ 5838874 (+)
G232521 NA non-coding downstream 224816 5859620 ~ 5859877 (+)
G232526 NA non-coding downstream 232063 5866867 ~ 5867089 (+)
G232530 NA non-coding downstream 235394 5870198 ~ 5870423 (+)
G231863 NA other upstream 1157727 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1694911 3848427 ~ 3914231 (+)
G230689 NA other upstream 2521065 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 3304075 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 3881664 1725627 ~ 1726793 (+)
G232558 NA other downstream 358856 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 669503 6305908 ~ 6312163 (+)
G232659 NA other downstream 740046 6374850 ~ 6375894 (+)
G232870 NA other downstream 1253108 6887912 ~ 6888503 (+)
G233024 NA other downstream 1932719 7567523 ~ 7609893 (+)
G232499 NA non-coding downstream 2897 5627572 ~ 5627795 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014940 rnf19b coding NC_007130.7 CM002903.2 35379899 ~ 35400819 (-)
bowfin (Amia calva) AMCG00002667 rnf19a,LOC102791892,LOC107698652,LOC106570794 coding CM030136.1 CM030136.1 25556983 ~ 25573560 (+)