CI01000054_05567094_05576916 (PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2)


Basic Information

Item Value
gene id CI01000054_05567094_05576916
gene name PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5567094 ~ 5577023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05567094_05576916.mRNA
TGTTTCTGTGTTGATTCGGATCACACATATATGGCGTTTGTGACCGTCTGCGGAGAGTTCTGCCAGGCTCAGCACCTCACCTTTGTGGACAAACGTCTTGCCAACATGAACCGCCCTGCCGCTGTTGAGATTTCCTATGACTGCATGAGATTCCTCATCACACACAACCCCACCAACTCCACTCTCAACAAGTTCACTGAGGAGCTGAAGAAGTTTGGGGTGAACACACTGGTGAGAGTATGTGAAGCCACCTATGACAAGGCGCCAGTGGAGAAGGAGGGCATCCAGGTCCTGGACTGGCCCTTTGATGATGGAGCTCCGCCCCCCACCCAGATTGTAGATGATTGGTTAAACCTGCTGAAGACTAAGTTCCGAGAGGAGCCAGGATGCTGCGTCGCCGTTCACTGTGTCGCAGGATTGGGCCGAGCACCTGTGCTGGTGGCTTTAGCCTTAATTGAGAGTGGAATGAAGTATGAAGATGCGGTGCAGTTTATAAGACACTTAGAAAAGCCCTCACCCTTAGGACCGTCCTACATCCAAATTGAAACGCAGGAGGACACTTGGCTTGTCTTAGGTACTCACTTTCTAAAGCTGCTCTTCGCTGGCTGGTCAGTAAAAAGCTTTACTGTAGACCTGGCTGTGACACGCACACATAATGTGTACACTTTATCTGTCACCCTACCGTTCAGCCCACAGACACACTGAAGGAAGTGAGAGGCGGGAGACTGGTCAGCTCTGGGTTTATTTTATTTTATTTTTAATCATTGTGCCCATTTTGAAAACACCCCCACTTCATCTTGGTTTTAAGACAA

Function

symbol description
ptp4a2b Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within dephosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including fin; gut; head; myotome; and neuromast. Orthologous to human PTP4A2 (protein tyrosine phosphatase 4A2).
ptp4a1 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in gut; myotome; nervous system; and pharyngeal arch. Orthologous to human PTP4A1 (protein tyrosine phosphatase 4A1).
ptp4a2 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Located in cytoplasm.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05567094_05576916.mRNA True 812 mRNA 0.49 6 5567094 5577023

Neighbor

gene id symbol gene type direction distance location
CI01000054_05538535_05543989 COL8A2 coding upstream 22060 5537408 ~ 5545034 (+)
CI01000054_05409518_05413525 NA coding upstream 153107 5409302 ~ 5413987 (+)
CI01000054_05402279_05408977 TRAPPC3.S, TRAPPC3, TPPC3 coding upstream 158009 5401447 ~ 5409085 (+)
CI01000054_05145255_05217807 CSMD2 coding upstream 349283 5145111 ~ 5217811 (+)
CI01000054_04962081_04977729 NA coding upstream 589157 4961930 ~ 4977937 (+)
CI01000054_05579068_05592326 ANLN coding downstream 2045 5579068 ~ 5592503 (+)
CI01000054_05595391_05599507 AK2 coding downstream 17930 5594953 ~ 5599695 (+)
CI01000054_05608892_05634793 RNF19B coding downstream 31434 5608457 ~ 5634804 (+)
CI01000054_05642130_05679022 NA coding downstream 64103 5641126 ~ 5682561 (+)
CI01000054_05696772_05708538 NA coding downstream 119326 5696093 ~ 5708637 (+)
G232467 NA non-coding upstream 92761 5474045 ~ 5474333 (+)
G232443 NA non-coding upstream 148225 5418632 ~ 5418869 (+)
G232379 NA non-coding upstream 165982 5400368 ~ 5401112 (+)
G232368 NA non-coding upstream 209422 5357241 ~ 5357672 (+)
G232293 NA non-coding upstream 306332 5259996 ~ 5260762 (+)
G232499 NA non-coding downstream 50549 5627572 ~ 5627795 (+)
G232519 NA non-coding downstream 261260 5838283 ~ 5838874 (+)
G232521 NA non-coding downstream 282597 5859620 ~ 5859877 (+)
G232526 NA non-coding downstream 289844 5866867 ~ 5867089 (+)
G231863 NA other upstream 1116364 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1653548 3848427 ~ 3914231 (+)
G230689 NA other upstream 2479702 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 3262712 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 3840301 1725627 ~ 1726793 (+)
G232558 NA other downstream 416637 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 727284 6305908 ~ 6312163 (+)
G232659 NA other downstream 797827 6374850 ~ 6375894 (+)
G232870 NA other downstream 1310889 6887912 ~ 6888503 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011094 tp4a2,ptp4a2,LOC107564493,LOC107653869,LOC107670276,LOC107710550,LOC105012508 coding CM030133.1 CM030133.1 10640780 ~ 10651427 (+)