CI01000054_04962081_04977729


Basic Information

Item Value
gene id CI01000054_04962081_04977729
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4961930 ~ 4977937 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_04962081_04977729.mRNA
GTACATATTACGAGCCATGATAGACTTGCACTATCCACCCATCATGGTAGCTGTGCAAAAATAGCTCAGGTGACTGAGCGAGAGGTGTTTGAGTGGAAATGTGTGTGGGTAGGCGGAATGGGGAAGCATGTGTTTATGAAGGTTGGAAATGATGGCAAGAGTGGATAATTGGACGGCTTTTACCCTGGACGTTAGCTACTCCGAGGCGCTCCAGTGGGTGCATAACTGCTGCCACCCAGGAATGCCTCGAGTCCTTGAAGACAAGAGAGTTACGGCAGTGATTGTGTTGGATGCAGCAGTCTGCGCTGAGAGCACCATCAATCCAGTTCACCTCACCTCATACCTCTGGCCTACAGGTGGACTTTGTGAACGAGGATCTCTCTGTCTGGGCAGAACAATGGTGTCCTTCTTCCTGCTGGAATATGGCTGGCTCAGCGATTCCCACCTTCATCCTTTGAATGAGATTAGTGAAAGGCCAGCCTGCTTTAGTTTGCTGTTAACATGTTTTTTAAAAAAAGCAAGCAGGTTGACGGGGTTTCAACTTCCTGCCCCTATAGTCAGCACAGGACCCAGACTCACACTATGGCTGCTGTCAGACTACGCTGTAAGTGGCCAGGGCTTCAAAGCCGTGTACGAAGCCTCACACCTTTTTGTTGCTCTCCTGTTTGAATTTTAGAGAGCGAAACAGAATAAGAACTTCAGTGAAGGTGATTATTAAGAGGATCTATTAGGAGACCCCAGCACTGCATTAGTCTCAGATGTATGTAATGGCCTCTCGTCCGCTAAGAGCACCCATAACTATTTTGATGGCCTGTGATGAGTTTTGTATCTTCTGAAGTGCGTGGTCCTCTGATATCCAAAGTGCCAAAAATGCCTGTACCTAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_04962081_04977729.mRNA True 884 mRNA 0.48 4 4961930 4977937

Neighbor

gene id symbol gene type direction distance location
CI01000054_04924205_04945546 NA coding upstream 16089 4924159 ~ 4945841 (+)
CI01000054_04658039_04659082 NA coding upstream 302229 4657991 ~ 4659701 (+)
CI01000054_04453321_04456780 ILF2, ILF2.L coding upstream 504822 4453321 ~ 4457108 (+)
CI01000054_04372172_04374454 NA coding upstream 587029 4371425 ~ 4374901 (+)
CI01000054_04248925_04249335 NA coding upstream 712343 4248359 ~ 4249587 (+)
CI01000054_05145255_05217807 CSMD2 coding downstream 167174 5145111 ~ 5217811 (+)
CI01000054_05402279_05408977 TRAPPC3.S, TRAPPC3, TPPC3 coding downstream 423510 5401447 ~ 5409085 (+)
CI01000054_05409518_05413525 NA coding downstream 431365 5409302 ~ 5413987 (+)
CI01000054_05538535_05543989 COL8A2 coding downstream 559471 5537408 ~ 5545034 (+)
CI01000054_05567094_05576916 PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2 coding downstream 589157 5567094 ~ 5577023 (+)
G232094 NA non-coding upstream 68888 4892757 ~ 4893042 (+)
G232077 NA non-coding upstream 125412 4836279 ~ 4836518 (+)
G232052 NA non-coding upstream 184943 4776670 ~ 4776987 (+)
G232050 NA non-coding upstream 188951 4772738 ~ 4772979 (+)
G232048 NA non-coding upstream 201713 4759983 ~ 4760217 (+)
G232116 NA non-coding downstream 124289 5102226 ~ 5181459 (+)
G232293 NA non-coding downstream 282059 5259996 ~ 5260762 (+)
G232368 NA non-coding downstream 379304 5357241 ~ 5357672 (+)
G232379 NA non-coding downstream 422431 5400368 ~ 5401112 (+)
G232443 NA non-coding downstream 440695 5418632 ~ 5418869 (+)
G231863 NA other upstream 511200 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1048384 3848427 ~ 3914231 (+)
G230689 NA other upstream 1874538 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 2657548 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 3235137 1725627 ~ 1726793 (+)
CI01000054_05608892_05634793 RNF19B other downstream 645078 5608457 ~ 5634804 (+)
G232558 NA other downstream 1015723 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 1326370 6305908 ~ 6312163 (+)
G232659 NA other downstream 1396913 6374850 ~ 6375894 (+)
G232870 NA other downstream 1909975 6887912 ~ 6888503 (+)

Expression


Co-expression Network