CI01000054_02289802_02330591 (SLC25A13)


Basic Information

Item Value
gene id CI01000054_02289802_02330591
gene name SLC25A13
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2289802 ~ 2330981 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02289802_02330591.mRNA
CCGTTACCGTCCCGCACGTGATCTCCATGGAAACGTCATCAAGCTCGAGAAGTCTATTAGTTGTGCGCTAGCTGAGCATGGCAGCAAAGGTAAGCTCTATTCTCGCACAGAAAAACAGTCTGGCTTTCGGCAGACGAAGGGAGCGCTGTGTTTGATCGTGAAGCATACGTATATGTCCAGAAAACATCATCGCGAGACACTGGAGAAGCGCGGATTAACTGATAACCTTCTGTACACAGTAGCCGGTGTGATAGAGCTAGTAATGATAAAGAGGGCTGATCCAGCAGAGCTCAAGTCCATTTTCTTGAAGTATGCCAGTGTGGAGAAGAATGGAGAGCGCCACATGTCCCCAGAGGACTTTGTGTCCAAGTTCCTCCATGCACAAACAGATATAAGGCTGTCCAAGGAGGGCACCGTTCTACTGGCTGGTGTTCTGGACCAGACCAAAGATGGGTTGATCTCCTTCCAGGAGTTTCTGGCTTTTGAGTCGGTGCTGTGTGCTCCGGATGCTCTCTTCATGGTCGCCTTCCAGCTCTTCGACAAAACTGGAAATGGCACTGCCACTTTTGGCTTATCTCTGATTTCAGAGGATGTGAAACAAGTTTTCGGTCAGACCACTATTCACCAGCACATCCCCTTTAACTGGAACTCAGAATTTGTTCAGCTTCACTTTGGCGCCGAGAGGAAGAAACACCTTAACTACGGGGAGTTCACTCAGTTTCTGCTGGCGTTTCTTCTATACGAAGACACGTCCACATTCGCAGCAGACCTATATTTCCAGTATTTTGCACCAGCAGCTCATTTATGCGGAGAGAGAAAAACAAGTCTCTTTAAAAGCCTGAGATGTCAGTCTGGTGGGGACTCGTCTCGCTCGGTTCTGATTCAGGTCGCTGAGTCGGCGTACAGGTTCACCCTGGGCTCGGTGGCTGGAGGGGGCTGTTTCTCCCGTTTAATGAGGTTATGCACCATGGGAACCTCCTGGGTGGATTCTTTTGTACCTGTGAGTGATCAGAGGTGTGTGTGTGTTGGTCTGTGTGTACGTAAAGGAGGTGGTGCTTGGGCCTGTGTTTGGCTCCAGACTGGCTCTCTCGGAGGAGACAAGCCCCCTCAGGTGTACATCTCTTTTAACAGTCTTGCTTTTCCATATTGTAACAAATTTTCTCTCATGACAGCCGTGGGTGCCACCGCCGTGTACCCCATCGACCTGGTGAAGACCCGCATGCAGAACCAGCGTTCTTCAGGTTCCTTCGTGGATGAGCTGATGTACAAGAACAGCTTTGACTGCTTCAAGAAGGTCGTGCGCTACGAGGGCTTCTTCGGTCTCTACAGAGAGCTGGAACATGAGTTTTTAAAGCATTCTGTGAGGTCACAGATTCAAATTGTGATTGCAAGGTGCAATTGCCATGTGACCTCCATTGAGAAGACTAACTACTGGTATTTGTCAATCATAAAGCTGACAAAAGAGAGGCTGAGATCCTCATCACCCGTGCCAAATTATAACGGGGATGGCCTTGTACCGCAGCTTCTGGGCGTGGCTCCCGAGAAAGCCATAAAGCTTACAGTTAACGACTTTGTGAGAGGAAAGACTATGCAAAAAGACGGCAGCGTTCCTCTACCTGCTGAAATCTTGGCTGGCGGATGTTGCACCTTCAATGAGATGATAATGATCTTTATTTTTAAATATGCTGCCTCGTACTCAATGGGATTTTTAAATGCGTACACTTGTGAGATTCGAGACTCATTTACCAGATTCCCCTTCAGATGCTGTCATGTCAAACTCGAACCATTTCAAAGAGCTCTGAGGAACCTGTTTCAACCTGCAGATGCTTTTTATCTGCCTCACAAGTACAAGGCTGGGGGATCTCAGGTGATCTTCACAAACCCTCTGGAGATTGTGAAGATCCGTCTGCAGGTGGCAGGAGAAATCACCACAGGGCCACGCGTCAGCGCTCTCTCTGTCATCCGTGACCTGGGTTTCTTTGGCCTGTACAAGAGTGCCTCAGTCATACTCCACATTCTCCAGCAAGTCTCCACACCCACCCACACACACCATCATGCCTCAATCCACCCCCTGCGGACTGCTGTAGCAGTCCAGCCAGTAAATCAGATGGCTGGTCACTGGAAAAAAGCCTGCGCTCCTGTCGTCTGGCCGAGGCAGGGTGCAAAAGCCTGTTTCCTGAGAGACATCCCCTTCTCGGCCATCTACTTCCCCTGTTACGCACACACCAAGGCGGCCCTGACCGACGAAGACGGGCGAGTGGGACCTGGCAGGCTTTTGCTGGCAGGGGCGCTGGCGGATTTACTGCTTTTTGACGTGAGTGTGATACGCGATCGAAAAGCCATACATGGTCAGAAAGAGCTTAGCATTCCTGTCTTTCCCAATGTTTTATATCTGTCAGATGGTTTAAAGCAAGTTTTTATGGGCATGCCTGCCGCATCCCTGGTGACCCCTGCTGATGTTATCAAGACCCGGTTACAAGTGGCTGCCCGTGCAGGCCAGACCACGTACAATGGACTCATTGACTGTTTCTGGAAGATTCTTCAGGAGGAGGGGCCTCGTGCCTTTTGGAAAGGAGCTGGAGCTCGTGTGTTTCGCTCCTCGCCGCAGTTTGGAGTGACGCTGGTGACCTATGAGCTGCTGCAGAGGTGGTTTTACGTAGACTTCGGTGGACAAAAACCAGCTGGCGCGGAGCCTACTCCCAAGTCTCGGATCAGCCTCCCGGCGCCCAATCCTGACCACATCGGTGGCTTCAGGTTGGCCGTGGCCACGTTTGCTGGCATCGAGAGCAAATTTGGACTTCATCTACCACGATTCCGAGCGCCTGCCACCCCCCATGCTTGAAGCAAACGCGTGCACATGGGGGTGACGGTACCTTGTGTTCAGCTGCACTGGAACAAACACACACTTATGAATCTTTTCCTTCATGTTGAGAACGTAAAACCTTCAGCAGATGAACTGGAACGGATGTTTTATGTGATTATTAATGCAAATTACAGCTTTAAAGTACATGGGGATGATCTACCACAAAGTTCTGGATTCTTAAATATAAATCATTTTACATTTGATTCTTTTAGTTGTTTTATTGTATTTTTATTTATTTACCCGGAAAAAATTAATGTCAATTCATGTTATATTTACTACAGTTATTCCCCTTTTTATTTATTTATTTAATGAACAAGTTACTTGATGCATATTGCAGAGTTTTAACAGTACAAGCATATCCAGTTGAAA
>TU261855
GAAACGTCATCAAGCTCGAGAAGTCTATTAGTTGTGCGCTAGCTGAGCATGGCAGCAAAGGTAATGATAAAGAGGGCTGATCCAGCAGAGCTCAAGTCCATTTTCTTGAAGTATGCCAGTGTGGAGAAGAATGGAGAGCGCCACATGTCCCCAGAGGACTTTGTGTCCAAGTTCCTCCATGCACAAACAGATATAAGGCTGTCCAAGGAGGGCACCGTTCTACTGGCTGGTGTTCTGGACCAGACCAAAGATGGGTTGATCTCCTTCCAGGAGTTTCTGGCTTTTGAGTCGGTGCTGTGTGCTCCGGATGCTCTCTTCATGGTCGCCTTCCAGCTCTTCGACAAAACTGGAAATGGCACTGCCACTTTTGAGGATGTGAAACAAGTTTTCGGTCAGACCACTATTCACCAGCACATCCCCTTTAACTGGAACTCAGAATTTGTTCAGCTTCACTTTGGCGCCGAGAGGAAGAAACACCTTAACTACGGGGAGTTCACTCAGTTTCTGCTGG

Function

symbol description
slc25a13 Predicted to enable L-aspartate transmembrane transporter activity and L-glutamate transmembrane transporter activity. Predicted to be involved in L-glutamate transmembrane transport; aspartate transmembrane transport; and malate-aspartate shuttle. Predicted to act upstream of or within amino acid transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02289802_02330591.mRNA False 3232 mRNA 0.49 22 2289802 2330981
TU261855 True 511 TUCP 0.49 5 2289831 2304382

Neighbor

gene id symbol gene type direction distance location
CI01000054_02272856_02274337 SHFM1, SHFM1.S, DSS1 coding upstream 15277 2271189 ~ 2274545 (+)
CI01000054_02239241_02261796 NA coding upstream 27944 2238324 ~ 2261858 (+)
CI01000054_02225261_02226820 DLX5, DLX5A coding upstream 62731 2224527 ~ 2227071 (+)
CI01000054_02195667_02196307 CHRAC1 coding upstream 92949 2195667 ~ 2196853 (+)
CI01000054_02096054_02105211 GNRHR1, GNRH-R coding upstream 184537 2096054 ~ 2105265 (+)
CI01000054_02417068_02430580 PDK4 coding downstream 86087 2417068 ~ 2431316 (+)
CI01000054_02500503_02511195 SGCE coding downstream 169522 2500503 ~ 2511195 (+)
CI01000054_02564258_02570248 NA coding downstream 232711 2563692 ~ 2570405 (+)
CI01000054_02589793_02592201 BET1 coding downstream 258812 2589793 ~ 2592926 (+)
CI01000054_02613166_02614884 TFPI2 coding downstream 282077 2613058 ~ 2615458 (+)
G230659 NA non-coding upstream 110708 2178841 ~ 2179094 (+)
G230634 NA non-coding upstream 156246 2133244 ~ 2133556 (+)
G230632 NA non-coding upstream 157765 2131697 ~ 2132037 (+)
G230759 NA non-coding downstream 105043 2436024 ~ 2437452 (+)
G230773 NA non-coding downstream 143621 2474602 ~ 2474818 (+)
G230775 NA non-coding downstream 145342 2476323 ~ 2476931 (+)
G230776 NA non-coding downstream 146313 2477294 ~ 2477529 (+)
G230777 NA non-coding downstream 146651 2477632 ~ 2477844 (+)
CI01000054_01725792_01726688 NA other upstream 563009 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 628237 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 707733 1578022 ~ 1579356 (+)
G229936 NA other upstream 882672 1397080 ~ 1407130 (+)
G229760 NA other upstream 1016052 1266350 ~ 1273750 (+)
G230689 NA other downstream 747521 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1577470 3848427 ~ 3914231 (+)
G231863 NA other downstream 2076171 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3292034 5608457 ~ 5634804 (+)
G232558 NA other downstream 3662679 5993660 ~ 6041863 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location