CI01000054_02500503_02511195 (SGCE)


Basic Information

Item Value
gene id CI01000054_02500503_02511195
gene name SGCE
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2500503 ~ 2511195 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_02500503_02511195.mRNA
TGGTCACCATCCTCTCTAAGTCGCACGCGGATCGCAACGTTTATCCTTCTGCCGGAGTGCTTTTCGTTCATGTGCTAGAGAGAGAATACTTTAAAGGAGAGTTCCCACCGTATCCAAAAGCAGGTGATTCGAGTAACGACCCCATCACATTTAACACTAACCTTAAAGGCTATCCAGACAGGCCTGGATGGTTGCGGTACATTCAAAGAACCCCGCATAGTGATGGAGTCCTCTATGGATCACCGACCGCTGAGCATGTGGGCAAGCCGACCATCATCGAGGCTTTAGATTCATGTAAGGATTTGGCTTTGTTATTCTTCTTTACCCTTGAGAAACTGTATGTGTTTGCATCTGGTTCTGACATCCTCTGCATGATTACCGCGTATAATAAACGCACTTTTGAAACTGCCAGGCACAACTTGGTCATAAACATCATGTCTACAGAAGAATTTCCCTTGCCCTATCAGGCCGAGTTCTTCATCAAGAACATGAACGTTGAGGAGATGTTGGCCAGTGAGGTGCTGGGAGATTTCCTCGGTGCTGTCAAGAACGTGTGGCAGCCAGAGAGACTCAACGCCATCAACATCACTTCAGCGCTGGACCGGGGTGGACGAGTGCCTTTACCCATCAATGACCTGAAAGAGGGAGTGTATGTGATGGTGGGAGCAGACGTGCAGTTCTCGTCGTGCCTTCGAGAGGTAGAGACCCCACAGAACCAGTTGCGTTGCAGTCAGGAGATGGAGCCTGTCATCAGCTGCGATAAGAAGTTCAGAGCTCAGTTCCACATCGACTGGTGCAAAATCTCTCTGGTGGACATCACTAAGGTTGTTCCAGTGCGCAGTAACCGTCCAGACCCGGGCATAGGTGTGCTGCCAGACATTGGCGAGTACAACCCCCCTTCTGAGTCACTGAAAAGTAGAGACTATTTCGCTGACTTCCTGATCACCCTGGCGGTGCCCTCAGCTGTCGCCCTGGTCCTCTTCATCATCCTTGCCTACTCCATGTGCTGCCGACGGGAAGGGGTGGAAAAAAGAAACATGCAAACACCAGAGTCCCCCTTTCCTACGTTTTGTTATCTCAGATCCTTCATCATGGTGACATTTTCATTTCCATCTCATTCATCCATTCACCTCTGTGTCTCCATGGAGTCATCAATGGGCAGCTGCTTCAGTGACAGAGATATATGCCAGCTTATTATAATTGTAAATAATTCATACTGTGGAATGAGTATTCAGCTGGTTCACCACAGCTCCATTCAGAAGTCTACTAAGGAACTTCGCAGCATGTCTAAGAACCGGGAGATCTCATGGCCTCTCTCGACACTGCCGGTCTTCCACCCTGTGAGCGGAGAGGTGGTGCCGCCCATCCACCCCGACAACTACGAGACCACCAGCATGCCGCTCATGCAGACGCAGACAAATCTTCAAAATCAGATCCAAATACCACAGCAGCAGATCTCTG

Function

symbol description
sgce Predicted to enable calcium ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; dendrite; and sarcolemma. Predicted to be integral component of membrane. Predicted to be part of sarcoglycan complex. Is expressed in central nervous system; retina; retinal ganglion cell layer; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in myoclonic dystonia. Orthologous to human SGCE (sarcoglycan epsilon).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_02500503_02511195.mRNA True 1461 mRNA 0.50 11 2500503 2511195

Neighbor

gene id symbol gene type direction distance location
CI01000054_02417068_02430580 PDK4 coding upstream 69187 2417068 ~ 2431316 (+)
CI01000054_02289802_02330591 SLC25A13 coding upstream 169522 2289802 ~ 2330981 (+)
CI01000054_02272856_02274337 SHFM1, SHFM1.S, DSS1 coding upstream 225978 2271189 ~ 2274545 (+)
CI01000054_02239241_02261796 NA coding upstream 238645 2238324 ~ 2261858 (+)
CI01000054_02225261_02226820 DLX5, DLX5A coding upstream 273432 2224527 ~ 2227071 (+)
CI01000054_02564258_02570248 NA coding downstream 52497 2563692 ~ 2570405 (+)
CI01000054_02589793_02592201 BET1 coding downstream 78598 2589793 ~ 2592926 (+)
CI01000054_02613166_02614884 TFPI2 coding downstream 101863 2613058 ~ 2615458 (+)
CI01000054_02652696_02685815 CALCR coding downstream 141501 2652696 ~ 2685833 (+)
CI01000054_02824071_02824355 NA coding downstream 312830 2824025 ~ 2824642 (+)
G230783 NA non-coding upstream 7375 2492896 ~ 2493128 (+)
G230782 NA non-coding upstream 7688 2492563 ~ 2492815 (+)
G230781 NA non-coding upstream 13247 2487023 ~ 2487256 (+)
G230780 NA non-coding upstream 13806 2486432 ~ 2486697 (+)
G230779 NA non-coding upstream 18135 2482131 ~ 2482368 (+)
G230711 NA non-coding downstream 34439 2545634 ~ 2546398 (+)
G230798 NA non-coding downstream 70101 2581296 ~ 2581522 (+)
G230710 NA non-coding downstream 71216 2582411 ~ 2583773 (+)
G230802 NA non-coding downstream 75720 2586915 ~ 2587138 (+)
G230812 NA non-coding downstream 100201 2611396 ~ 2612378 (+)
CI01000054_01725792_01726688 NA other upstream 773710 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 838938 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 918434 1578022 ~ 1579356 (+)
G229936 NA other upstream 1093373 1397080 ~ 1407130 (+)
G230689 NA other downstream 567307 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1397256 3848427 ~ 3914231 (+)
G231863 NA other downstream 1895957 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3111820 5608457 ~ 5634804 (+)
G232558 NA other downstream 3482465 5993660 ~ 6041863 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location