G230802


Basic Information

Item Value
gene id G230802
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2586915 ~ 2587138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261953
ATCGAGCCCTGCTTATAATAGAGCCAAGAGCTCTGAAAATAACACGGCCCAGATTCATTTGTAATTGAATAGAAGAAGATGTGAATATTAGAGCATGATTTCTTTTCTTTAATGTTTAATGTCAACCCAAAAACGGAGTGACAGAGCACTTTCCTCCACTGGCGTCTCTACTTCTGACGGGTTTCTTTCTTATTTCTGAGTTCCCTGAGTTTCTGAGAGAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261953 True 224 lncRNA 0.39 1 2586915 2587138

Neighbor

gene id symbol gene type direction distance location
CI01000054_02564258_02570248 NA coding upstream 16510 2563692 ~ 2570405 (+)
CI01000054_02500503_02511195 SGCE coding upstream 75720 2500503 ~ 2511195 (+)
CI01000054_02417068_02430580 PDK4 coding upstream 155599 2417068 ~ 2431316 (+)
CI01000054_02289802_02330591 SLC25A13 coding upstream 255934 2289802 ~ 2330981 (+)
CI01000054_02272856_02274337 SHFM1, SHFM1.S, DSS1 coding upstream 312390 2271189 ~ 2274545 (+)
CI01000054_02589793_02592201 BET1 coding downstream 2655 2589793 ~ 2592926 (+)
CI01000054_02613166_02614884 TFPI2 coding downstream 25920 2613058 ~ 2615458 (+)
CI01000054_02652696_02685815 CALCR coding downstream 65558 2652696 ~ 2685833 (+)
CI01000054_02824071_02824355 NA coding downstream 236887 2824025 ~ 2824642 (+)
CI01000054_02951289_02967370 NA coding downstream 363777 2950915 ~ 2967660 (+)
G230710 NA non-coding upstream 3142 2582411 ~ 2583773 (+)
G230798 NA non-coding upstream 5393 2581296 ~ 2581522 (+)
G230711 NA non-coding upstream 40517 2545634 ~ 2546398 (+)
G230783 NA non-coding upstream 93787 2492896 ~ 2493128 (+)
G230782 NA non-coding upstream 94100 2492563 ~ 2492815 (+)
G230812 NA non-coding downstream 24258 2611396 ~ 2612378 (+)
G230707 NA non-coding downstream 46153 2633291 ~ 2689215 (+)
G230816 NA non-coding downstream 109375 2696513 ~ 2697025 (+)
G230817 NA non-coding downstream 110352 2697490 ~ 2697760 (+)
G230828 NA non-coding downstream 195798 2782936 ~ 2783757 (+)
CI01000054_01725792_01726688 NA other upstream 860122 1725627 ~ 1726793 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 925350 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 1004846 1578022 ~ 1579356 (+)
G229936 NA other upstream 1179785 1397080 ~ 1407130 (+)
G230689 NA other downstream 491364 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1321313 3848427 ~ 3914231 (+)
G231863 NA other downstream 1820014 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3035877 5608457 ~ 5634804 (+)
G232558 NA other downstream 3406522 5993660 ~ 6041863 (+)

Expression


Co-expression Network