RNA id: CI01000054_02289802_02330591.mRNA



Basic Information


Item Value
RNA id CI01000054_02289802_02330591.mRNA
length 3232
RNA type mRNA
GC content 0.49
exon number 22
gene id CI01000054_02289802_02330591
representative False

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2289802 ~ 2330981 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCGTTACCGTCCCGCACGTGATCTCCATGGAAACGTCATCAAGCTCGAGAAGTCTATTAGTTGTGCGCTAGCTGAGCATGGCAGCAAAGGTAAGCTCTATTCTCGCACAGAAAAACAGTCTGGCTTTCGGCAGACGAAGGGAGCGCTGTGTTTGATCGTGAAGCATACGTATATGTCCAGAAAACATCATCGCGAGACACTGGAGAAGCGCGGATTAACTGATAACCTTCTGTACACAGTAGCCGGTGTGATAGAGCTAGTAATGATAAAGAGGGCTGATCCAGCAGAGCTCAAGTCCATTTTCTTGAAGTATGCCAGTGTGGAGAAGAATGGAGAGCGCCACATGTCCCCAGAGGACTTTGTGTCCAAGTTCCTCCATGCACAAACAGATATAAGGCTGTCCAAGGAGGGCACCGTTCTACTGGCTGGTGTTCTGGACCAGACCAAAGATGGGTTGATCTCCTTCCAGGAGTTTCTGGCTTTTGAGTCGGTGCTGTGTGCTCCGGATGCTCTCTTCATGGTCGCCTTCCAGCTCTTCGACAAAACTGGAAATGGCACTGCCACTTTTGGCTTATCTCTGATTTCAGAGGATGTGAAACAAGTTTTCGGTCAGACCACTATTCACCAGCACATCCCCTTTAACTGGAACTCAGAATTTGTTCAGCTTCACTTTGGCGCCGAGAGGAAGAAACACCTTAACTACGGGGAGTTCACTCAGTTTCTGCTGGCGTTTCTTCTATACGAAGACACGTCCACATTCGCAGCAGACCTATATTTCCAGTATTTTGCACCAGCAGCTCATTTATGCGGAGAGAGAAAAACAAGTCTCTTTAAAAGCCTGAGATGTCAGTCTGGTGGGGACTCGTCTCGCTCGGTTCTGATTCAGGTCGCTGAGTCGGCGTACAGGTTCACCCTGGGCTCGGTGGCTGGAGGGGGCTGTTTCTCCCGTTTAATGAGGTTATGCACCATGGGAACCTCCTGGGTGGATTCTTTTGTACCTGTGAGTGATCAGAGGTGTGTGTGTGTTGGTCTGTGTGTACGTAAAGGAGGTGGTGCTTGGGCCTGTGTTTGGCTCCAGACTGGCTCTCTCGGAGGAGACAAGCCCCCTCAGGTGTACATCTCTTTTAACAGTCTTGCTTTTCCATATTGTAACAAATTTTCTCTCATGACAGCCGTGGGTGCCACCGCCGTGTACCCCATCGACCTGGTGAAGACCCGCATGCAGAACCAGCGTTCTTCAGGTTCCTTCGTGGATGAGCTGATGTACAAGAACAGCTTTGACTGCTTCAAGAAGGTCGTGCGCTACGAGGGCTTCTTCGGTCTCTACAGAGAGCTGGAACATGAGTTTTTAAAGCATTCTGTGAGGTCACAGATTCAAATTGTGATTGCAAGGTGCAATTGCCATGTGACCTCCATTGAGAAGACTAACTACTGGTATTTGTCAATCATAAAGCTGACAAAAGAGAGGCTGAGATCCTCATCACCCGTGCCAAATTATAACGGGGATGGCCTTGTACCGCAGCTTCTGGGCGTGGCTCCCGAGAAAGCCATAAAGCTTACAGTTAACGACTTTGTGAGAGGAAAGACTATGCAAAAAGACGGCAGCGTTCCTCTACCTGCTGAAATCTTGGCTGGCGGATGTTGCACCTTCAATGAGATGATAATGATCTTTATTTTTAAATATGCTGCCTCGTACTCAATGGGATTTTTAAATGCGTACACTTGTGAGATTCGAGACTCATTTACCAGATTCCCCTTCAGATGCTGTCATGTCAAACTCGAACCATTTCAAAGAGCTCTGAGGAACCTGTTTCAACCTGCAGATGCTTTTTATCTGCCTCACAAGTACAAGGCTGGGGGATCTCAGGTGATCTTCACAAACCCTCTGGAGATTGTGAAGATCCGTCTGCAGGTGGCAGGAGAAATCACCACAGGGCCACGCGTCAGCGCTCTCTCTGTCATCCGTGACCTGGGTTTCTTTGGCCTGTACAAGAGTGCCTCAGTCATACTCCACATTCTCCAGCAAGTCTCCACACCCACCCACACACACCATCATGCCTCAATCCACCCCCTGCGGACTGCTGTAGCAGTCCAGCCAGTAAATCAGATGGCTGGTCACTGGAAAAAAGCCTGCGCTCCTGTCGTCTGGCCGAGGCAGGGTGCAAAAGCCTGTTTCCTGAGAGACATCCCCTTCTCGGCCATCTACTTCCCCTGTTACGCACACACCAAGGCGGCCCTGACCGACGAAGACGGGCGAGTGGGACCTGGCAGGCTTTTGCTGGCAGGGGCGCTGGCGGATTTACTGCTTTTTGACGTGAGTGTGATACGCGATCGAAAAGCCATACATGGTCAGAAAGAGCTTAGCATTCCTGTCTTTCCCAATGTTTTATATCTGTCAGATGGTTTAAAGCAAGTTTTTATGGGCATGCCTGCCGCATCCCTGGTGACCCCTGCTGATGTTATCAAGACCCGGTTACAAGTGGCTGCCCGTGCAGGCCAGACCACGTACAATGGACTCATTGACTGTTTCTGGAAGATTCTTCAGGAGGAGGGGCCTCGTGCCTTTTGGAAAGGAGCTGGAGCTCGTGTGTTTCGCTCCTCGCCGCAGTTTGGAGTGACGCTGGTGACCTATGAGCTGCTGCAGAGGTGGTTTTACGTAGACTTCGGTGGACAAAAACCAGCTGGCGCGGAGCCTACTCCCAAGTCTCGGATCAGCCTCCCGGCGCCCAATCCTGACCACATCGGTGGCTTCAGGTTGGCCGTGGCCACGTTTGCTGGCATCGAGAGCAAATTTGGACTTCATCTACCACGATTCCGAGCGCCTGCCACCCCCCATGCTTGAAGCAAACGCGTGCACATGGGGGTGACGGTACCTTGTGTTCAGCTGCACTGGAACAAACACACACTTATGAATCTTTTCCTTCATGTTGAGAACGTAAAACCTTCAGCAGATGAACTGGAACGGATGTTTTATGTGATTATTAATGCAAATTACAGCTTTAAAGTACATGGGGATGATCTACCACAAAGTTCTGGATTCTTAAATATAAATCATTTTACATTTGATTCTTTTAGTTGTTTTATTGTATTTTTATTTATTTACCCGGAAAAAATTAATGTCAATTCATGTTATATTTACTACAGTTATTCCCCTTTTTATTTATTTATTTAATGAACAAGTTACTTGATGCATATTGCAGAGTTTTAACAGTACAAGCATATCCAGTTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU261819 lncRNA upstream 15257 2272797 ~ 2274545 (+) True CI01000054_02272856_02274337
TU261806 lncRNA upstream 45059 2229830 ~ 2230020 (+) True G230666
TU261795 lncRNA upstream 110708 2178841 ~ 2179094 (+) True G230659
TU261768 lncRNA upstream 156246 2133244 ~ 2133556 (+) True G230634
TU261766 lncRNA upstream 157765 2131697 ~ 2132037 (+) True G230632
TU261910 lncRNA downstream 105043 2436024 ~ 2437452 (+) True G230759
TU261924 lncRNA downstream 143621 2474602 ~ 2474818 (+) True G230773
TU261926 lncRNA downstream 145342 2476323 ~ 2476931 (+) True G230775
TU261927 lncRNA downstream 146313 2477294 ~ 2477529 (+) True G230776
TU261928 lncRNA downstream 146651 2477632 ~ 2477844 (+) True G230777
CI01000054_02272856_02274337.mRNA mRNA upstream 15277 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02239241_02261796.mRNA mRNA upstream 27944 2238324 ~ 2261858 (+) False CI01000054_02239241_02261796
CI01000054_02225261_02226820.mRNA mRNA upstream 62731 2224527 ~ 2227071 (+) True CI01000054_02225261_02226820
CI01000054_02195667_02196307.mRNA mRNA upstream 92949 2195667 ~ 2196853 (+) True CI01000054_02195667_02196307
CI01000054_02096054_02105211.mRNA mRNA upstream 184537 2096054 ~ 2105265 (+) True CI01000054_02096054_02105211
CI01000054_02417068_02430580.mRNA mRNA downstream 86087 2417068 ~ 2431316 (+) True CI01000054_02417068_02430580
CI01000054_02500503_02511195.mRNA mRNA downstream 169522 2500503 ~ 2511195 (+) True CI01000054_02500503_02511195
CI01000054_02564258_02570248.mRNA mRNA downstream 232711 2563692 ~ 2570405 (+) True CI01000054_02564258_02570248
CI01000054_02589793_02592201.mRNA mRNA downstream 258812 2589793 ~ 2592926 (+) True CI01000054_02589793_02592201
CI01000054_02613166_02614884.mRNA mRNA downstream 282077 2613058 ~ 2615458 (+) True CI01000054_02613166_02614884
TU261003 other upstream 563009 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 628237 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 707733 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 882672 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 1016052 1266350 ~ 1273750 (+) True G229760
TU261835 other downstream 747521 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1577470 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 2076171 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3292034 5623015 ~ 5623101 (+) True G232485
TU263881 other downstream 3662679 5993660 ~ 6041863 (+) True G232558

Expression Profile