RNA id: TU261766


Basic Information

Item Value
RNA id TU261766
length 341
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G230632
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2131697 ~ 2132037 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCATTTTTGGGTAAACTAACCCTTTAACATTTGCCAAAAATATAACTTTTTTGTTGTTATTAAAAAACAAACAAGCAAGCCCAGCCCAGGTGAGAAAAAGTAACGCAAAAGTAATGTAACGCATTACTTTTCATAAAAAGTATAACGCAATTAGTTACTTTTTTAGGGAGTCACGCAATACTGTAATGCATTACTTTTAAAAGTAACTTTCCACAACGCTGGCTACTACATTTGACCATAAAATATAAAACCGCATTCCAACTGTTTATGTGCATTTGTTTAGTGTGTAGGTGTGTATAACCCTTTGCGTAACGCTGAGGTCTGCTGCATTAATCTGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261758 lncRNA upstream 6960 2124367 ~ 2124737 (+) True G230624
TU261756 lncRNA upstream 9033 2122321 ~ 2122664 (+) True G230622
TU261751 lncRNA upstream 15880 2115436 ~ 2115817 (+) True G230617
TU261737 lncRNA upstream 23022 2105720 ~ 2108675 (+) True G230606
TU261571 lncRNA upstream 49238 2082025 ~ 2082459 (+) True G230475
TU261768 lncRNA downstream 1207 2133244 ~ 2133556 (+) True G230634
TU261795 lncRNA downstream 46804 2178841 ~ 2179094 (+) True G230659
TU261806 lncRNA downstream 97793 2229830 ~ 2230020 (+) True G230666
TU261819 lncRNA downstream 140760 2272797 ~ 2274545 (+) True CI01000054_02272856_02274337
TU261910 lncRNA downstream 303987 2436024 ~ 2437452 (+) True G230759
CI01000054_02096054_02105211.mRNA mRNA upstream 26432 2096054 ~ 2105265 (+) True CI01000054_02096054_02105211
CI01000054_02024879_02026284.mRNA mRNA upstream 104118 2024879 ~ 2027579 (+) False CI01000054_02024879_02026284
CI01000054_01879983_01965668.mRNA mRNA upstream 165538 1879983 ~ 1966159 (+) True CI01000054_01879983_01965668
CI01000054_01871659_01875753.mRNA mRNA upstream 255487 1871548 ~ 1876210 (+) True CI01000054_01871659_01875753
CI01000054_01725792_01726688.mRNA mRNA upstream 404957 1725627 ~ 1726740 (+) False CI01000054_01725792_01726688
CI01000054_02195667_02196307.mRNA mRNA downstream 63630 2195667 ~ 2196853 (+) True CI01000054_02195667_02196307
CI01000054_02225261_02226820.mRNA mRNA downstream 92490 2224527 ~ 2227071 (+) True CI01000054_02225261_02226820
CI01000054_02239241_02261796.mRNA mRNA downstream 106287 2238324 ~ 2261858 (+) False CI01000054_02239241_02261796
CI01000054_02272856_02274337.mRNA mRNA downstream 139152 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02289802_02330591.mRNA mRNA downstream 157765 2289802 ~ 2330981 (+) False CI01000054_02289802_02330591
TU261003 other upstream 404904 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 470132 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 549628 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 724567 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 857947 1266350 ~ 1273750 (+) True G229760
TU261855 other downstream 157794 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 946465 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1776414 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 2275115 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3490978 5623015 ~ 5623101 (+) True G232485

Expression Profile