Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU263121 |
| length | 37780 |
| RNA type | TUCP |
| GC content | 0.37 |
| exon number | 3 |
| gene id | G231863 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 4407152 ~ 4450730 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU263142 | lncRNA | upstream | 10866 | 4396021 ~ 4396286 (+) | True | G231884 |
| TU263141 | lncRNA | upstream | 13626 | 4393294 ~ 4393526 (+) | True | G231883 |
| TU263082 | lncRNA | upstream | 124005 | 4282516 ~ 4283147 (+) | True | G231832 |
| TU263054 | lncRNA | upstream | 158090 | 4210022 ~ 4211723 (+) | True | G231807 |
| TU263061 | lncRNA | upstream | 175559 | 4224024 ~ 4231593 (+) | True | G231813 |
| TU263153 | lncRNA | downstream | 24390 | 4475120 ~ 4475704 (+) | True | G231895 |
| TU263283 | lncRNA | downstream | 231702 | 4682432 ~ 4685153 (+) | True | G232014 |
| TU263313 | lncRNA | downstream | 284667 | 4735397 ~ 4735780 (+) | True | G232042 |
| TU263319 | lncRNA | downstream | 309253 | 4759983 ~ 4760217 (+) | True | G232048 |
| TU263321 | lncRNA | downstream | 322008 | 4772738 ~ 4772979 (+) | True | G232050 |
| CI01000054_04372172_04374454.mRNA | mRNA | upstream | 32251 | 4371425 ~ 4374901 (+) | True | CI01000054_04372172_04374454 |
| CI01000054_04248925_04249335.mRNA | mRNA | upstream | 157565 | 4248359 ~ 4249587 (+) | False | CI01000054_04248925_04249335 |
| CI01000054_03955331_03962388.mRNA | mRNA | upstream | 444757 | 3955331 ~ 3962395 (+) | True | CI01000054_03955331_03962388 |
| CI01000054_03848427_03914231.mRNA | mRNA | upstream | 492921 | 3848427 ~ 3914231 (+) | False | CI01000054_03848427_03914231 |
| CI01000054_03707961_03761024.mRNA | mRNA | upstream | 646040 | 3707835 ~ 3761112 (+) | True | CI01000054_03707961_03761024 |
| CI01000054_04453321_04456780.mRNA | mRNA | downstream | 2591 | 4453321 ~ 4457108 (+) | True | CI01000054_04453321_04456780 |
| CI01000054_04658039_04659082.mRNA | mRNA | downstream | 207261 | 4657991 ~ 4659701 (+) | True | CI01000054_04658039_04659082 |
| CI01000054_04924205_04945546.mRNA | mRNA | downstream | 473429 | 4924159 ~ 4945841 (+) | True | CI01000054_04924205_04945546 |
| CI01000054_04962081_04977729.mRNA | mRNA | downstream | 511200 | 4961930 ~ 4977937 (+) | True | CI01000054_04962081_04977729 |
| CI01000054_05145255_05217807.mRNA | mRNA | downstream | 694381 | 5145111 ~ 5217811 (+) | True | CI01000054_05145255_05217807 |
| TU262576 | other | upstream | 493606 | 3908451 ~ 3913546 (+) | True | CI01000054_03848427_03914231 |
| TU261835 | other | upstream | 1319760 | 3078502 ~ 3087392 (+) | True | G230689 |
| TU261855 | other | upstream | 2102770 | 2289831 ~ 2304382 (+) | True | CI01000054_02289802_02330591 |
| TU261003 | other | upstream | 2680359 | 1725669 ~ 1726793 (+) | True | CI01000054_01725792_01726688 |
| TU260765 | other | upstream | 2745587 | 1650960 ~ 1661565 (+) | True | CI01000054_01650242_01665628 |
| TU263797 | other | downstream | 1172285 | 5623015 ~ 5623101 (+) | True | G232485 |
| TU263881 | other | downstream | 1542930 | 5993660 ~ 6041863 (+) | True | G232558 |
| TU263932 | other | downstream | 1853577 | 6304307 ~ 6304441 (+) | True | G232608 |
| TU264006 | other | downstream | 1924120 | 6374850 ~ 6375894 (+) | True | G232659 |
| TU264264 | other | downstream | 2437182 | 6887912 ~ 6888503 (+) | False | G232870 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00028248 | True | 3263 | mRNA | 0.42 | 4 | NC_007130.7 | 37509638 ~ 37519610 (+) |
