RNA id: TU263797


Basic Information

Item Value
RNA id TU263797
length 87
RNA type TUCP
GC content 0.48
exon number 1
gene id G232485
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5623015 ~ 5623101 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAAGCAGCGCCTGGTTTACGGCAGCGGACAGGTCGTGAGTGAACTGTGGGCCTGAGGAAGGTTAAAGTGACTCTGAACCGAACGAATCATGCCGTTCGTTGACCTCCAGTCAAAGCTTGGGATTAATCTGGACCAGTGGCTCTTAGCTCAGAGTGGGGAACAGCCACAGAAGCGGGCCGCTCGCTGCCATGCCTTTCAGAAGGAATGGATAGAGTGCGCCCACGGCATCGGCCAGAACCGGGCCAAAAAGGAGTGCAATCTGGAGTTGGAAGATTTCTATGAGTGCTTGCACCGCCGAAAGACTCAACAACGCTTATATGAGATCCGTAAGCAGAAGGAGAAGATGATTAAAGAGGGAATGTACACTCCCCCTCCGCACCACTCAGGCAATGAAGAGGTCCGGCCGTGAATTCAGCAACCCCAGACCGAACATACAATCTCTTTCATCCTGTTGTACAGTTACTTCCCTGCTTATGTATTATAATATTATTGCTGTATCAACATTGTTTAATGTTCAAAAAAATAAATATAATGATTCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263779 lncRNA upstream 148682 5474045 ~ 5474333 (+) True G232467
TU263754 lncRNA upstream 204146 5418632 ~ 5418869 (+) True G232443
TU263682 lncRNA upstream 221903 5400368 ~ 5401112 (+) True G232379
TU263664 lncRNA upstream 265343 5357241 ~ 5357672 (+) True G232368
TU263584 lncRNA upstream 362253 5259996 ~ 5260762 (+) False G232293
TU263819 lncRNA downstream 2897 5627572 ~ 5627795 (+) True G232499
TU263823 lncRNA downstream 69662 5694337 ~ 5696013 (+) True G232503
TU263839 lncRNA downstream 213608 5838283 ~ 5838874 (+) True G232519
TU263841 lncRNA downstream 234945 5859620 ~ 5859877 (+) True G232521
TU263846 lncRNA downstream 242192 5866867 ~ 5867089 (+) True G232526
CI01000054_05595391_05599507.mRNA mRNA upstream 23320 5594953 ~ 5599695 (+) True CI01000054_05595391_05599507
CI01000054_05579068_05592326.mRNA mRNA upstream 30512 5579068 ~ 5592503 (+) True CI01000054_05579068_05592326
CI01000054_05567094_05576916.mRNA mRNA upstream 45992 5567094 ~ 5577023 (+) True CI01000054_05567094_05576916
CI01000054_05538535_05543989.mRNA mRNA upstream 77981 5537408 ~ 5545034 (+) True CI01000054_05538535_05543989
CI01000054_05409518_05413525.mRNA mRNA upstream 209028 5409302 ~ 5413987 (+) True CI01000054_05409518_05413525
CI01000054_05642130_05679022.mRNA mRNA downstream 16451 5641126 ~ 5679484 (+) False CI01000054_05642130_05679022
CI01000054_05696772_05708538.mRNA mRNA downstream 71674 5696349 ~ 5708637 (+) False CI01000054_05696772_05708538
CI01000054_05713420_05771550.mRNA mRNA downstream 88745 5713420 ~ 5771745 (+) True CI01000054_05713420_05771550
CI01000054_05772612_05808901.mRNA mRNA downstream 147777 5772452 ~ 5809366 (+) True CI01000054_05772612_05808901
CI01000054_05813838_05819498.mRNA mRNA downstream 188089 5812764 ~ 5819740 (+) True CI01000054_05813838_05819498
TU263121 other upstream 1172285 4407152 ~ 4450730 (+) True G231863
TU262576 other upstream 1709469 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU261835 other upstream 2535623 3078502 ~ 3087392 (+) True G230689
TU261855 other upstream 3318633 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261003 other upstream 3896222 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU263881 other downstream 368985 5993660 ~ 6041863 (+) True G232558
TU263932 other downstream 679632 6304307 ~ 6304441 (+) True G232608
TU264006 other downstream 750175 6374850 ~ 6375894 (+) True G232659
TU264264 other downstream 1263237 6887912 ~ 6888503 (+) False G232870
TU264265 other downstream 1263439 6888114 ~ 6888503 (+) True G232870

Expression Profile