CI01000054_05409518_05413525


Basic Information

Item Value
gene id CI01000054_05409518_05413525
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5409302 ~ 5413987 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_05409518_05413525.mRNA
GAATAAATCATTGACTATGAACAACCGTGGCTCAGCCCCTCATTTTTCATTCTTCTACTCAATAGGCCTTTGACATAAACTAATATTTACTCTAAGTTCTAATAAAGCGCTCATTTGTGCAAACCATATCGCAGTTCTGTTTTCATGTCTTTAACGCTTGTATCGCAAACAACTTTAGATGGCTAATCTAAAACCAACATTTGAAGAAAGGGCCCCATGTTCGACAAGAACAGAGCCGTAGTCTTGGGAGACGCACGTTTTGTAGAAAGGGCCAATGGTGTTAAGGGGAGTCTGCCTTGCCAGGGTGAAGGGATTGGCAGCAAGATGATGAAGGTCAAAGGAGGGAAACGGAGCAGGGCAAGGCCGAGTGCTTTTCAAAAACACACCTTGTGGGAATATCAACATGCCCTGGAGCACGGAGAACCGAGCCGATGCTGGAGAGCCATCACAGCCCGTCGCATGTTGTCCAAGTCTCCCACAGCTCTTCTGGAGCACAAAGGAGATGACACACGAATGGATGATCTTCCCTGGCTCGCAGGAACAGCAGCATGCATACAGTTTCCAGTAAAGGTCACAAGACAGTAAATCAAAGGATCCGAGATGGAAATGCAACAAACCCTCTTGTCTGAGGTAATTCTCATGCAGATGTCAAGAAAAAATGTAATTAGATCCTTGAGGAACACCACATGTCAAAGACTTTTCCTGTTAGTTCTCAAACATTTTGTTTGTTTCTTATTTAATACGTAAAATCTTCTTTGCTTTCTTTACACATCACTTTTTAAGAGGATTACCTTGAATAGGTCACCATATTTATAACATGTAAAATGTGCTACTTCCACTTTCCCATGACTGCTACTATATGCTGATCTGAATCAAACACATCTGGGATAAATAAGAGAGCAGAACTCCTCAGTCTCACTCAACAACCTCGACCTGTTGCCAATGCCTTAAATGGTACTTGAAAGGTCCTCTTTTTCCATCGTATCACTAGACTAATAGATTATATCACATTGATTTTCAATTTTTGGAGAGGATTGATGGGGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_05409518_05413525.mRNA True 1047 mRNA 0.42 2 5409302 5413987

Neighbor

gene id symbol gene type direction distance location
CI01000054_05402279_05408977 TRAPPC3.S, TRAPPC3, TPPC3 coding upstream 217 5401447 ~ 5409085 (+)
CI01000054_05145255_05217807 CSMD2 coding upstream 191491 5145111 ~ 5217811 (+)
CI01000054_04962081_04977729 NA coding upstream 431365 4961930 ~ 4977937 (+)
CI01000054_04924205_04945546 NA coding upstream 463461 4924159 ~ 4945841 (+)
CI01000054_04658039_04659082 NA coding upstream 749601 4657991 ~ 4659701 (+)
CI01000054_05538535_05543989 COL8A2 coding downstream 123421 5537408 ~ 5545034 (+)
CI01000054_05567094_05576916 PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2 coding downstream 153107 5567094 ~ 5577023 (+)
CI01000054_05579068_05592326 ANLN coding downstream 165081 5579068 ~ 5592503 (+)
CI01000054_05595391_05599507 AK2 coding downstream 180966 5594953 ~ 5599695 (+)
CI01000054_05608892_05634793 RNF19B coding downstream 194470 5608457 ~ 5634804 (+)
G232379 NA non-coding upstream 8190 5400368 ~ 5401112 (+)
G232368 NA non-coding upstream 51630 5357241 ~ 5357672 (+)
G232293 NA non-coding upstream 148540 5259996 ~ 5260762 (+)
G232116 NA non-coding upstream 227843 5102226 ~ 5181459 (+)
G232094 NA non-coding upstream 516260 4892757 ~ 4893042 (+)
G232443 NA non-coding downstream 4645 5418632 ~ 5418869 (+)
G232467 NA non-coding downstream 60058 5474045 ~ 5474333 (+)
G232499 NA non-coding downstream 213585 5627572 ~ 5627795 (+)
CI01000054_05696772_05708538 NA non-coding downstream 280350 5696093 ~ 5708637 (+)
G232519 NA non-coding downstream 424296 5838283 ~ 5838874 (+)
G231863 NA other upstream 958572 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1495756 3848427 ~ 3914231 (+)
G230689 NA other upstream 2321910 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 3104920 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 3682509 1725627 ~ 1726793 (+)
G232558 NA other downstream 579673 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 890320 6305908 ~ 6312163 (+)
G232659 NA other downstream 960863 6374850 ~ 6375894 (+)
G232870 NA other downstream 1473925 6887912 ~ 6888503 (+)

Expression


Co-expression Network