RNA id: TU261795


Basic Information

Item Value
RNA id TU261795
length 254
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G230659
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2178841 ~ 2179094 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAAGTAGAGGGATGACAGGAAATGATGGGGAAAAGAGGGTGTAGTAGATTTGAAGTCCTATTATTACCCAGTTAAGCGCCACAAACAGGGTTATTATCATCAACTAAAACATTTCTGTTCATTGAAATAAAGCTGAAATACATATAAATATTAGTTGAAAAACTAAATGAAATTAGAAATGTTGCCTTGGCAATAAACTGAAATCTTTTTAAGTTGAAGCACTAAAGTTATTAACTGGAAATAAATACAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261768 lncRNA upstream 45285 2133244 ~ 2133556 (+) True G230634
TU261766 lncRNA upstream 46804 2131697 ~ 2132037 (+) True G230632
TU261758 lncRNA upstream 54104 2124367 ~ 2124737 (+) True G230624
TU261756 lncRNA upstream 56177 2122321 ~ 2122664 (+) True G230622
TU261751 lncRNA upstream 63024 2115436 ~ 2115817 (+) True G230617
TU261806 lncRNA downstream 50736 2229830 ~ 2230020 (+) True G230666
TU261819 lncRNA downstream 93703 2272797 ~ 2274545 (+) True CI01000054_02272856_02274337
TU261910 lncRNA downstream 256930 2436024 ~ 2437452 (+) True G230759
TU261924 lncRNA downstream 295508 2474602 ~ 2474818 (+) True G230773
TU261926 lncRNA downstream 297229 2476323 ~ 2476931 (+) True G230775
CI01000054_02096054_02105211.mRNA mRNA upstream 73576 2096054 ~ 2105265 (+) True CI01000054_02096054_02105211
CI01000054_02024879_02026284.mRNA mRNA upstream 151262 2024879 ~ 2027579 (+) False CI01000054_02024879_02026284
CI01000054_01879983_01965668.mRNA mRNA upstream 212682 1879983 ~ 1966159 (+) True CI01000054_01879983_01965668
CI01000054_01871659_01875753.mRNA mRNA upstream 302631 1871548 ~ 1876210 (+) True CI01000054_01871659_01875753
CI01000054_01725792_01726688.mRNA mRNA upstream 452101 1725627 ~ 1726740 (+) False CI01000054_01725792_01726688
CI01000054_02195667_02196307.mRNA mRNA downstream 16573 2195667 ~ 2196853 (+) True CI01000054_02195667_02196307
CI01000054_02225261_02226820.mRNA mRNA downstream 45433 2224527 ~ 2227071 (+) True CI01000054_02225261_02226820
CI01000054_02239241_02261796.mRNA mRNA downstream 59230 2238324 ~ 2261858 (+) False CI01000054_02239241_02261796
CI01000054_02272856_02274337.mRNA mRNA downstream 92095 2271189 ~ 2274525 (+) False CI01000054_02272856_02274337
CI01000054_02289802_02330591.mRNA mRNA downstream 110708 2289802 ~ 2330981 (+) False CI01000054_02289802_02330591
TU261003 other upstream 452048 1725669 ~ 1726793 (+) True CI01000054_01725792_01726688
TU260765 other upstream 517276 1650960 ~ 1661565 (+) True CI01000054_01650242_01665628
TU260728 other upstream 596772 1578435 ~ 1582069 (+) True G229750
TU260932 other upstream 771711 1397080 ~ 1407130 (+) False G229936
TU260738 other upstream 905091 1266350 ~ 1273750 (+) True G229760
TU261855 other downstream 110737 2289831 ~ 2304382 (+) True CI01000054_02289802_02330591
TU261835 other downstream 899408 3078502 ~ 3087392 (+) True G230689
TU262576 other downstream 1729357 3908451 ~ 3913546 (+) True CI01000054_03848427_03914231
TU263121 other downstream 2228058 4407152 ~ 4450730 (+) True G231863
TU263797 other downstream 3443921 5623015 ~ 5623101 (+) True G232485

Expression Profile