G230606


Basic Information

Item Value
gene id G230606
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 2105720 ~ 2108675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261737
ATTTTAACCATCTAAGCACATGGTCTGCGCATGGCGCAGTTGCACTTAGGGCGTGTACGAATCCACTTTTGCTAGTTTAACGACGGAAAAAATGTTCGGCACGCCAGGTCCATGGTCCAAAAGGATTGTACCTAGTCTCTTAATGAGTCATGGGTGTGTTTTGGCCGTAACGTGCAATAAACCAATCTCATCTCCCATTCCCTTTAAAAGCCAGTTGTGCTTGCACTATGGCGGATTCGCTATTTACATGGCGGAATTTGCAAGCGGAAAGACTGAACGCTTCTCCAGAGAGGAATCCTTTTATTTTTAGTATTTGGCATGTTTGTGTGCTGCTTCGCGTCCCTGTGTGTGTAACAAGCAGAGTGTACGGTGTTGTGCACCTGCCTATAGGCACATATTACTAACGCACCCTTTAAATAACAAAAAAATACTGCTCTATTGACTTTAGACCAGGTTTTTGTTGGTCAATGGCGCAGTCGTTTTCAGTTGCCTTAAAATAGCAACACGCCAACAATGCGCCTGAACACACCTCGTTTTTAGACCAGCACACCCATGGGCGAACAGATGGGCGTGAGTGCATTTGCTATTTAAACAACGTGGCGCAGGACGTGAAAATGATAGCTGCATCGGGCTGAAACTAGCATAAAACACTTGCGTCGAGCCTGGCGTTGCATTGCGCCGGGTATATGATAGGGCCCTCTATATATATATATATATAAAGGCTAATGTTTTATGTATATGAGGAGCGGAGAAGAGTGTCTTTAGCATTTGTTGTCGAGTCACAGCCAATACTGTCTTAAATAGCCTGTGTGTAGCACTTCATCTTTTATAACATGAGATTTTGGCCAAATGACAGAAAAAAACTGAGCGCCCACATAGTTACAATAGACATTATAACCTGTAGGTTGACGAAAATGTAATATGATGCACTTACTGCCTCAGATGCGGCCGTTCTAATGATGGACAACAAAATTTACTGTAGCTCCATTTGAGCTTGATTTTGGTAAAATGTTAATAAAAATGACACACGCAAGTGTCTGACCATATAAAGCCACAATATCAATTTAAACACTGCGTTGTCAGTGTTTTTTCCATTTCCTGAAAAGTAGCAGTTTTGTACATACAAGGTTTCCGCCCGACAGTGAAGATATGCTGCTGATGGTGTCATGTATTTATGGTTTGTGCAACTATGATGCATTTGCTGGAATTGGACTTGAATGCACTTAATATTGAACATGGAACAGCAACAGTATCACATTGTGTTTTCAAGCTTAGATCTTCTAGAAAGATGTAACAACAGGTAAATTTGAATGTAATAGACCAAATAGCAGCACAATATCTCAGGCAATACCTTGAATGTGAGATATTTGCCTGTCTGGAACAGGGTAATAAATATACAGTGCCTCATTAATGGACCACAAGCATAACAGCTTACGTGTTTGGAATCAGTTGATGATGATCTCGAATTAATTATAGCTCAGAGTTCAGAGCGACAACCCAGTTAAAAGCTTCTCTGACACATTGCTCATCTAACGTTTCTTCTCCGCTTCCTGTTTAGGAATGTGACTTAATGTTTTAAAATGGCCTTAGCACATGAATCATTCATTCAAATGTTCAGGCTTACACACTGTGTTTATCTGTGGAATCATCAGAGACGTGTTTCACTGAATTCACTCATTCTTGTGCAGTGTATTGTGGTGATGATAATGCATGGCTCTCCAGAAAACTATCTTTGTTGTGTGTGCTTGTGATTAAAAATTAATGTGGATAGACCATCCAGCCTTAAAGGGATAGTTCACACAAAAAATAATAATTCTTTTAATATTTACTCAACCCATGTTGTTGAAAACCTGTTTTTCTGAGGAACATGAAATGAGAATCTTTACACTAATTGTTTCCATACAAGTACAATTTATGGTGACCTGTCGAGCTCAAAAAGCTTCGTGTTTCATAATTTCATATTATTCACACCATATTCCAAGTCTTATGAAGCCCTACAAAAGCTTTGAAGCCCTGAAATTTAAGTCATTATTCATTCTCAAATCAAATAATTCACAAAACATATATTGTTGGACAATCAGTATCATCAAAAGTCGCAGGCAATAGCAAATAGGCAAAATATTTGAGAGCTGGATTGCATAAATGTTTTGATTTAAAGAGGACCTGTTATGCTCTTTTACAAAGTCTTGATTTTGTTCTTGGGCTCTACTAGATTAGGTTTTCAAAAAACACCTTATTTTTCACATATTCGACATTGTTACAGCTCCTCTCTTCCCAGTCTGTCAGTAACGCTGTTCAGTTCCTGTCTCTATAAAGCCCCTCCTTCTGAAAAGCACAATATGCTCTGATTGGTCGGCTGGACCGGTGTTCTATGATTGGTCAAGTGCTTCAAGCGTGTTCCGGAAATGTCACGCCTCTTTACCATAACCACAAGTTAACCACACTACTAACTAACTCAACCAGGCCCCGCTCCTTTATTTTGCGTTTGCATTTGGCGGGAATTATTTAAATGAGGAATATTGTGACGTGTTTGTTCCCAGAAGAAAACTCAAGAGGCGTAATGGAGGCGTTTCAGGGAGTTCAGAAACACTGACACTGATATAGAGAATAACTCCCGCTGGAGGGACTTTGCAGACCTTTTTTCATGCTCAAACAGCAACATTACACACTAAAGAAAGCTGAAAATGTATGAAAGCATAATGGGACCCCTTTAAGAGAGAATAATGGCTTAAATTTTGGTTGGAGCTTGACAGCCTATGGTCACTATGAACTGTTGTTGTTTGTAAAACAGCCGCGTAAAGAATCAAAATTTTGTGTTCATCAGCAAAAATAACAGCATATGGTTTGGAATGACATGAATGAGAAAATAATGATTGAATCTTTTTGGGTGAACGCTTCCATTGATTTAAGGATCTGAATGAATGTGATTGCTGTTACAATGTGCTTCACAGTTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261737 True 2956 lncRNA 0.39 1 2105720 2108675

Neighbor

gene id symbol gene type direction distance location
CI01000054_02096054_02105211 GNRHR1, GNRH-R coding upstream 455 2096054 ~ 2105265 (+)
CI01000054_02024879_02026284 NA coding upstream 78141 2024879 ~ 2027615 (+)
CI01000054_01879983_01965668 TRIO, TRIOA coding upstream 139561 1879983 ~ 1966159 (+)
CI01000054_01871659_01875753 NA coding upstream 229510 1871548 ~ 1876210 (+)
CI01000054_01725792_01726688 NA coding upstream 378980 1725627 ~ 1726793 (+)
CI01000054_02195667_02196307 CHRAC1 coding downstream 86992 2195667 ~ 2196853 (+)
CI01000054_02225261_02226820 DLX5, DLX5A coding downstream 115852 2224527 ~ 2227071 (+)
CI01000054_02239241_02261796 NA coding downstream 129649 2238324 ~ 2261858 (+)
CI01000054_02272856_02274337 SHFM1, SHFM1.S, DSS1 coding downstream 162514 2271189 ~ 2274545 (+)
CI01000054_02289802_02330591 SLC25A13 coding downstream 181127 2289802 ~ 2330981 (+)
G230475 NA non-coding upstream 23261 2082025 ~ 2082459 (+)
G230500 NA non-coding upstream 87352 2016274 ~ 2018368 (+)
G230496 NA non-coding upstream 95284 2010002 ~ 2010436 (+)
G230463 NA non-coding upstream 133859 1858188 ~ 1971861 (+)
G230617 NA non-coding downstream 6761 2115436 ~ 2115817 (+)
G230622 NA non-coding downstream 13646 2122321 ~ 2122664 (+)
G230624 NA non-coding downstream 15692 2124367 ~ 2124737 (+)
G230632 NA non-coding downstream 23022 2131697 ~ 2132037 (+)
G230634 NA non-coding downstream 24569 2133244 ~ 2133556 (+)
CI01000054_01650242_01665628 PLEKHO1A other upstream 444155 1650242 ~ 1666115 (+)
CI01000054_01578022_01579167 NA other upstream 523651 1578022 ~ 1579356 (+)
G229936 NA other upstream 698590 1397080 ~ 1407130 (+)
G229760 NA other upstream 831970 1266350 ~ 1273750 (+)
G230689 NA other downstream 969827 3078502 ~ 3087392 (+)
CI01000054_03848427_03914231 NA other downstream 1799776 3848427 ~ 3914231 (+)
G231863 NA other downstream 2298477 4407152 ~ 4450730 (+)
CI01000054_05608892_05634793 RNF19B other downstream 3514340 5608457 ~ 5634804 (+)

Expression


Co-expression Network