AMCG00011094 (tp4a2,ptp4a2,LOC107564493,LOC107653869,LOC107670276,LOC107710550,LOC105012508)


Basic Information

Item Value
gene id AMCG00011094
gene name tp4a2,ptp4a2,LOC107564493,LOC107653869,LOC107670276,LOC107710550,LOC105012508
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 10640780 ~ 10651427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011094
tttctttttttttttttttttttttttttttttttttttttcttttttttgcggGGGCATTGCGGACTTgacacccccctcccctgcccttttctctccttcctctctcctcaACCTGTTGCCTTCCccctctttatttttttttaaatataaatatattttttttttatttaagtttttaagcATATTTTTATTCCGCACATGTTCCAGtaacaataattacaaaaataaaacgcagTCCTAACTGACATCTGAGCCAAAgcctccttttaaaaaaaataatttaagaccTATTTTaggaccttttttttttttttttttttttgctgtagttttttttttgcttgccaACATGAACCGTCCAGCCCCAGTTGAAATTACCTACGATGGTATGAGGTTTTTAATAACCCACAACCCCACCAATGCAACACTCAATAAGTTCACAGAGAAATACGGGGTACACACACTGGTCCGTGTCTGTGATGCCACCTACGACAAAGTGCCCGTGGAGAAAGAAGGCATTCATGTCCTGGATTGGCCTTTTGATGATGGAGCCCCTCCCCCGACCCAGATTGTCGATGATTGGCTGAACCTGTTGAAAACTAAATTCCGAGAGGAACCAGGATGTTGCATTGCAGTGCACTGTGTCGCAGGATTGGGCCGAGCACCTGTCCTGGTGGCCCTAGCCCTGATCGAATGTGGAATGAAGTACGAAGACGCTGTCCAGTTCATAAGACAAAAAAGACGAGGAGCTTTCAACTCCAAACAGCTACTTTACCTCGAAAAATACCGGCCCAAGATGAGATTGAAATTCAAGGATGCCAACGGCCCCAACTGCTGTATTCAGTAGATTGAGAAAGTGATAAATATGATGGTGGTGATTAAATTGAGGAAATCGATTTACAGAGcggaaacaaataaatgttaaaaaatgaaatttcatGGCTTTTGAGGATTCTCTCGCCGCCAGGCAAACACGGAGCTGCACGGTCTGTCTACTCGCATCCTCGGTGCCCAATCACTGAGCGAgttttaacaaacacatttcagcgGGGGGTGGGATCTATACAGGATACTCATCATTGTGGGGTAggattacatgttttttttgttagttttttttcatattgtggTAGGTCAGGCCTGATGGGTGATGGATTAAATCTCTTTGGGATTGATCAGTCTACTGAAAAAGTCCAGATTCGTCTCACTGGGGGTTGGGGATGGAGagaggtttgtgtgtgttgggggtttgCAGAGATCAAACCAGCGAtgttatttgtactttttttt

Function

symbol description
ptp4a2 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Located in cytoplasm.

NR:

description
PREDICTED: protein tyrosine phosphatase type IVA 2

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011094 True 1293 mRNA 0.41 5 10640780 10651427

Neighbor

gene id symbol gene type direction distance location
AMCG00011093 col8a2,LOC106570550,LOC107724334,LOC107565043 coding upstream 29898 10608957 ~ 10610882 (+)
AMCG00011095 NA coding upstream 37666 10601480 ~ 10603114 (+)
AMCG00011091 trappc3,LOC107653823,LOC107564495 coding upstream 137314 10498477 ~ 10503466 (+)
AMCG00011090 csmd2 coding upstream 448539 10139461 ~ 10192241 (+)
AMCG00011088 csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197 coding upstream 553076 10073722 ~ 10087704 (+)
AMCG00011097 NA coding downstream 387629 11039056 ~ 11093828 (+)
AMCG00011096 NA coding downstream 442408 11093835 ~ 11124053 (+)
AMCG00011098 adgrb2 coding downstream 485289 11136716 ~ 11171971 (+)
AMCG00011099 adgrb2,LOC106931923,LOC107082735 coding downstream 568461 11219888 ~ 11252848 (+)
AMCG00011100 NA coding downstream 651637 11303064 ~ 11347011 (+)
G104255 NA non-coding upstream 23584 10555729 ~ 10617196 (+)
G104221 NA non-coding upstream 767890 9872653 ~ 9872890 (+)
G104204 NA non-coding upstream 893916 9693144 ~ 9746864 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 1159106 9477567 ~ 9481674 (+)
G104147 NA non-coding upstream 1164937 9474174 ~ 9475843 (+)
G104271 NA non-coding downstream 72123 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 721127 11372554 ~ 11377085 (+)
G104310 NA non-coding downstream 767239 11418666 ~ 11420066 (+)
G104326 NA non-coding downstream 881493 11532920 ~ 11593994 (+)
G104443 NA non-coding downstream 1192983 11844410 ~ 11844623 (+)
AMCG00011089 csmd2 other upstream 368917 10203617 ~ 10271863 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 1091260 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 2088175 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 3537272 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 3719849 6892397 ~ 6920931 (+)
G104273 NA other downstream 167261 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 992590 11644017 ~ 11651021 (+)
G104382 NA other downstream 1014771 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 1157419 11808846 ~ 11810822 (+)
G104435 NA other downstream 1190702 11842129 ~ 11844089 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_05567094_05576916 PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2 coding CI01000054 null 5567094 ~ 5577023 (+)