G104435


Basic Information

Item Value
gene id G104435
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11842129 ~ 11844089 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130558
AGCTCAGCAGATCAGCTTTATTTCTATGTGCTGGATGTGCCTCAGTGTCccagcaggcagacagacaggcacacaaGCCCCTGCCCAGCACACAGCCTTAGAGAGCCAGGTCCACAGACCTGCCACACACAGCTATCAACAGCATTACATCCCCCGTGTGCAGCACCTGCTgtcacaaaaatacattcagagAGTCagttacagagagagacaaagtgagagacagggagaaGAGGAGACTGGTAGACAGTCAGTTAAATAGCTAGTCGGTATACCAGTCAGACAGGCAGTCAATGTCAGTCAGTCATCATCTCCTATGCCCAGTCAGACAGGGCAGTGTTTTTCTATCTCTCACTCTGCAGTATAACAATGCAATAGATTAGTTATGCAATTGGTAGTAGAAAAcgaacaaaacaattaacataaaacacatacatacacacaaacccaGTCCCCACATTATAAACACTCTCACAGTTGGAGAGAAACGGAGAGAGAGCTTCCACTATAAGTACACCTCTACCCAGATATTTTGACTTCAGAGGGTTGTTATATCGTACAGGTGAAATGGCATTGCTTTGTCCTCGAGTATTTCCATTATTAATAGTCAGCAAATCATGAGTGGAAGAactaatacagtaaataaatgtgttattctgGTTTAATTGTATCTCCTTTCttcaattacaataattattttctaaacttGTTTAAAAGATAGTGTAATAACACaggttaaatgaaaacatgtggGCTCAGTTTCATCACACAATcatttggtgtgtgtgtaatgcttagtaaaatgcaaaattcataaaatcagaaaatgcttttaattacacatccttaCAAATTGTTGTAATAAAAGATTtgggtattttagcaaataggagCATGGGCCACTTTATCACAATTTTTGCTTTACCACGTTATATCAGAATTTGCATTATATCGAGGTAGAGGTGTACCACCTGTGAGTAGAGGGCAGGGCCctgaaaagttaaaaatacacagtaaaaataaattcaccagggatgatgatgataataataacaaaagagATAAGCAGAAGGAGAAGTTCTAATAAACTCTGTGAGGAAAATTTAGAAATTAACTGTAgtaatattaacaacaataataataataataataataacacatgtaGAAGCAGTAGCTCAGTTTGCAGGTGCTTGGGTAAGGGGGGCTAGGAAAGTCTTCCTCCCCATCcctcacaatctctctctccctcaatacttgttgttattattattattattactacatttcttagcagattcCCTTATCCcaggcaacttacaattgttacaatatatcacattatttttacatacaattacccattgatacagctgggtttgtactggagcaatctaggtacagtacgtTGCTcatggtacaacagcagtgtcccgcACCTgtgattgaacccacaactctCTGCTTCAGAATCCAGAGCTTCTCTCTGTGTTCAGACATACAAGGCAATCTTGTCCGGGCAGTGCAGGTGGTGGTGAGTGGGGGTGGCAGAGGGCTGACATGTGGGTGTCGCAGAGTCCAGGGTGGCATGTCCAGTGGGGCGGGGGCTGTGAGGAGACCCCCCATCGTCGAAGCTGAGGTCAGCAAGGTCATCGGACTGCGTGTCGGAACTCTCCAGCTCACTGCGCAGACTTTCCGGCTGTGCTAGAGTGACGTCGCCGCACTGTCGCCGCGGTGTCTCCCCCGATGACAGtgatgcccccccacccccaagccCCCCCCTCCGTGAGCTGCAGTCCTGAGGCTCCTCCCCAGGGCCAGGCGCCGTGGTGACGGAGGGGGGGGGCGGGGCCAGATGCGAGGCCGGGAGCAGGTCatcctcactgccctcactggACAGTCGCAGGTGGCTGGGCTTGGTCTCAATGTCCACCTGAATCTCC

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU130558 True 1940 TUCP 0.45 2 11842129 11844089

Neighbor

gene id symbol gene type direction distance location
AMCG00011116 NA coding upstream 3100 11833844 ~ 11839029 (+)
AMCG00011111 NA coding upstream 199902 11638002 ~ 11642227 (+)
AMCG00011108 NA coding upstream 254923 11574540 ~ 11587206 (+)
AMCG00011105 kcnq4 coding upstream 289151 11542988 ~ 11552978 (+)
AMCG00011107 NA coding upstream 311400 11527210 ~ 11530729 (+)
AMCG00011122 NA coding downstream 99510 11943599 ~ 11946001 (+)
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding downstream 118309 11962398 ~ 11966995 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding downstream 142773 11986862 ~ 11988912 (+)
AMCG00011133 NA coding downstream 190208 12034297 ~ 12038373 (+)
AMCG00011134 NA coding downstream 200946 12045035 ~ 12050580 (+)
G104326 NA non-coding upstream 248135 11532920 ~ 11593994 (+)
G104310 NA non-coding upstream 422063 11418666 ~ 11420066 (+)
G104307 col9a2 non-coding upstream 465044 11372554 ~ 11377085 (+)
G104271 NA non-coding upstream 1118239 10723550 ~ 10723890 (+)
G104255 NA non-coding upstream 1224933 10555729 ~ 10617196 (+)
G104443 NA non-coding downstream 321 11844410 ~ 11844623 (+)
G104444 NA non-coding downstream 597 11844686 ~ 11845805 (+)
G104445 NA non-coding downstream 1899 11845988 ~ 11846253 (+)
G104479 NA non-coding downstream 70405 11914494 ~ 11917031 (+)
G104480 NA non-coding downstream 73599 11917688 ~ 11918147 (+)
AMCG00011115 NA other upstream 31307 11808846 ~ 11810822 (+)
G104382 NA other upstream 170789 11666198 ~ 11671340 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other upstream 191108 11644017 ~ 11651021 (+)
G104273 NA other upstream 1022706 10818688 ~ 10819423 (+)
AMCG00011089 csmd2 other upstream 1570266 10203617 ~ 10271863 (+)
G104550 NA other downstream 222405 12066494 ~ 12067337 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other downstream 223362 12067451 ~ 12140465 (+)
G104694 NA other downstream 681271 12525360 ~ 12527031 (+)
G104719 NA other downstream 766040 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 826287 12670376 ~ 12679429 (+)

Expression


Co-expression Network