AMCG00011120 (ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449)


Basic Information

Item Value
gene id AMCG00011120
gene name ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11986862 ~ 11988912 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011120
ATGGATGTCAATGCCCAGGTGGCTCTGGTGTGTGCCCAGCTGTCCCAGGACCCCCAGCTGCAGGGTGGCTACAACGCCATGGGCTTCTCCCAGGGGGGGCAATTCCTGAGGGCCGTGGCTCAGCGCTGTCCCTCCCCCCCCATGAGGAACCTCATCTCAGTGGGAGGGCAGCACCAAGgggtGTATGGTCTCCCTCACTGTCCTGGTCAGAGTTCCCACATCTGTGACTGGATAAGAAAGATGCTGAACTCTGGGGCCTACACTGCAGCTGTGCAGAACCAGTGAGTGTCAGTCTGGTGCAGCATTaacatgtctgtatgtgtgtccgTCTTGTGCAGTATTAACCTGTCTGTCACAGTCTGGTGCAGTATTAacctgtctgtctttgtgtccGTCTGGTGCAGTATtaacctgtctgtctgtgagtccGTCTGGTGCAGTATtaacctgtctgtctgtgagtccGTCTGGTGCAGTATtgacctgtctgtctgtgtgtcagtctggtGCAGGCACAGTACTGGCACGACCCTCTGAACGAGGAGCTGTACAGGAACCACAGCCTGTTCCTTGCTGACATCAATCAAGAGAGGGTCAGTCTGTCTGTtggtctgtctgtgtatctgtctgtaaATCTTTGTCTTTGGGGAGtctatatctgtctgtctgtgagtctgtgCATTTGaatctgcctgtctgtctatatatgcattattttcaCCTGCCTCCATCTGTTTAGtccccctccctgtctctctccactCTTCCTCCCTTGTGCACACTAAacccatctgtctctctcagtgctgtgtgtattaacccctctctctcccaggcagtGAATGAGACCTATAAGAAGAATCTGCAGTCCCTCAATAAGTTGGTGCTGGTGAAGTTCCTCAAAGACAGCATGGTGGATCCACGAGAGTCTGAGtggttTGGCTTCTACAAGCCTGGTCAGGCTAAGGAGACTCAGACTCTACAGGAGAGTGTGCTGTACACCGAGGACCTGCTGGGTCTGAGGGAGATGGACAAGTCCAAGAAACTGGACTTTCTGTCCTGTGATGGAGACCACCTGCAGTTCACAGAGGACTGGTTCACTGAACACCTGCTGCCCTACCTGCAGTGACACACCTGAGCCAAGCAACGCACCCCCCACCCACTGTTAAGCCTGCACTGACATCCTCATGTACATAAcccattacacacacaccctgatacacatacacagacacacacactcacactcgtATGCAGACACTCCCCAGTGTAAGCCATAcccaatacaaacacacattgacGCACTCACACCAGTACTTCAGTACACGCATGCGCATACAAGCCGCCCCTCACCTGATGTGGCTGCAGCGCTGGCCGATGCCCATCTCTCTCCCGTCTTCCACACGCACCACTGCCTGCCCAACTTGCAGGAGCTATGCCCTTAAAACAGCTGACCAATCACTTATCCAGTTACCAATCATGCAACAAAACaatgtctttgtgtttagttttgtacttttgaaattcataacaaaaaataaattgatactAACAAGaaca

Function

symbol description
ppt1 Predicted to enable palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation and receptor-mediated endocytosis. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 1. Orthologous to human PPT1 (palmitoyl-protein thioesterase 1).

NR:

description
PREDICTED: palmitoyl-protein thioesterase 1-like

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function

KEGG:

id description
K01074 PPT; palmitoyl-protein thioesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011120 True 1560 mRNA 0.51 5 11986862 11988912

Neighbor

gene id symbol gene type direction distance location
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding upstream 19867 11962398 ~ 11966995 (+)
AMCG00011122 NA coding upstream 40861 11943599 ~ 11946001 (+)
AMCG00011116 NA coding upstream 147833 11833844 ~ 11839029 (+)
AMCG00011111 NA coding upstream 344635 11638002 ~ 11642227 (+)
AMCG00011108 NA coding upstream 399656 11574540 ~ 11587206 (+)
AMCG00011133 NA coding downstream 45385 12034297 ~ 12038373 (+)
AMCG00011134 NA coding downstream 56123 12045035 ~ 12050580 (+)
AMCG00011142 NA coding downstream 154950 12143862 ~ 12148439 (+)
AMCG00011146 NA coding downstream 295960 12284872 ~ 12300928 (+)
AMCG00011147 dock2 coding downstream 324572 12313484 ~ 12322097 (+)
G104512 NA non-coding upstream 8497 11977236 ~ 11978365 (+)
G104477 NA non-coding upstream 37150 11948240 ~ 11949712 (+)
G104489 NA non-coding upstream 54576 11930208 ~ 11932286 (+)
G104488 NA non-coding upstream 56848 11929213 ~ 11930014 (+)
G104483 NA non-coding upstream 65665 11919874 ~ 11921197 (+)
G104596 NA non-coding downstream 162453 12151365 ~ 12151633 (+)
G104603 NA non-coding downstream 261347 12250259 ~ 12254820 (+)
G104609 NA non-coding downstream 270700 12259612 ~ 12259861 (+)
G104627 NA non-coding downstream 344416 12333328 ~ 12334214 (+)
G104666 NA non-coding downstream 440584 12429496 ~ 12434556 (+)
G104435 NA other upstream 142773 11842129 ~ 11844089 (+)
AMCG00011115 NA other upstream 176040 11808846 ~ 11810822 (+)
G104382 NA other upstream 315522 11666198 ~ 11671340 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other upstream 335841 11644017 ~ 11651021 (+)
G104273 NA other upstream 1167439 10818688 ~ 10819423 (+)
G104550 NA other downstream 77582 12066494 ~ 12067337 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other downstream 78539 12067451 ~ 12140465 (+)
G104694 NA other downstream 536448 12525360 ~ 12527031 (+)
G104719 NA other downstream 621217 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 681464 12670376 ~ 12679429 (+)

Expression


Co-expression Network