G104627


Basic Information

Item Value
gene id G104627
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12333328 ~ 12334214 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130827
AAATCCCCCTGCAGGGGAgtctggggggagggggggtggtagTGTTAAGCAAGGAAGTGGAGATGCTCTTGGACCCACTGATGAGGGTGTGTGCACGCCAGTGTTTCTGATGGTGTTGAGGTGTGGATGGGAATTTTCCCCTCCCCCATGTCCCTCTGCAGGTCCTCTAGCTGCAGCCAGCTCTGTGGATATGTtaccaaattaatttgttagcTATTTAACAGTGATTGGTTATCAAGATGGCTATGCTGAAAACCTGGGCTGGACTGAGCTGCACACCAGCAATTTGTATGATTAGACCGGAGCTAGGGGAGTGATGGGCTGTGTCTGTCCAGCACATTGAAGGACCCCCCTTCGATGCACAGCAGCCCCTCCAGGACATAGACACTCTTCTGATTTACtacttccttttcctttttatttttttttatttttctttctttcactgcTATTTTGTATGAATCAGAGTTACTATAATTATTGGCCACAATGATTAAATGTTCTCTttctttgcaaaaaaacaacaacaggggGGTGTGGCCGCTTCTTGTGAGTGACTGTTGCATTTCCGGTGTGTTGGTGGAGTGAGTGGTAGGTAATTCAGGGTGTGTGAAAATCCAGTCTTTATTTCAACCTGTGTCAATTGTGGTAAGAATCACAATTTTctgattgattttgtttctaaCTGGATTGTTGTATTTACTCTGACAATGTTGCTGCTAAattacagcaacaaaaacaatacaacaatcaaTCCAGCTAGATGTGAACCTGCTCATGAAACAGTTATTTCTACATGAGGCTGGTCCAAATTGTTGCTGCCCAGATTAACACTTATGGAATAAGTGGCCCCTTGGATTCTGTCTGATTTCTGGCATTGAATAAAA

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation

RNA

RNA id representative length rna type GC content exon number start site end site
TU130827 True 887 lncRNA 0.43 1 12333328 12334214

Neighbor

gene id symbol gene type direction distance location
AMCG00011143 etf1,etf1b,LOC108437808 coding upstream 575 12326097 ~ 12332753 (+)
AMCG00011147 dock2 coding upstream 11231 12313484 ~ 12322097 (+)
AMCG00011146 NA coding upstream 32400 12284872 ~ 12300928 (+)
AMCG00011142 NA coding upstream 184889 12143862 ~ 12148439 (+)
AMCG00011134 NA coding upstream 282748 12045035 ~ 12050580 (+)
AMCG00011145 fbxw11,LOC105905987,LOC106603254,LOC108277126 coding downstream 863 12335077 ~ 12345218 (+)
AMCG00011148 fgf18a,LOC107747128,LOC107596396,LOC107660900 coding downstream 32783 12366997 ~ 12375038 (+)
AMCG00011144 NA coding downstream 41238 12375452 ~ 12379543 (+)
AMCG00011158 NA coding downstream 154198 12488412 ~ 12492340 (+)
AMCG00011153 NA coding downstream 209298 12543512 ~ 12551029 (+)
G104609 NA non-coding upstream 73467 12259612 ~ 12259861 (+)
G104603 NA non-coding upstream 78508 12250259 ~ 12254820 (+)
G104596 NA non-coding upstream 181695 12151365 ~ 12151633 (+)
G104512 NA non-coding upstream 354963 11977236 ~ 11978365 (+)
G104477 NA non-coding upstream 383616 11948240 ~ 11949712 (+)
G104666 NA non-coding downstream 95282 12429496 ~ 12434556 (+)
G104709 NA non-coding downstream 216826 12551040 ~ 12551864 (+)
G104800 NA non-coding downstream 496635 12830849 ~ 12831280 (+)
G104814 NA non-coding downstream 601222 12935436 ~ 12940170 (+)
G104835 NA non-coding downstream 684578 13018792 ~ 13019064 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 192863 12067451 ~ 12140465 (+)
G104550 NA other upstream 265991 12066494 ~ 12067337 (+)
G104435 NA other upstream 489239 11842129 ~ 11844089 (+)
AMCG00011115 NA other upstream 522506 11808846 ~ 11810822 (+)
G104382 NA other upstream 661988 11666198 ~ 11671340 (+)
G104694 NA other downstream 191146 12525360 ~ 12527031 (+)
G104719 NA other downstream 275915 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 336162 12670376 ~ 12679429 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 608166 12942380 ~ 12943082 (+)
AMCG00011204 NA other downstream 1534123 13868337 ~ 13878282 (+)

Expression


Co-expression Network