G104326


Basic Information

Item Value
gene id G104326
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11532920 ~ 11593994 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU130425
ctaataatcctttaggtgagtgtacatataNNNNNNtatatatgttttctttttcttcttttttttaaataggtctCATCTGGCTTTCCTCGGGCGCAGagtttcatgtttaatttttttttaattgaatgttattttttcattcgcTTTGTTCGTTCCTTGCATTTGTTGGTGCGTTCATTTGCCTTTCCCTCTTGGCTGGCTTGACAAGGGAGGTGACTTCGCTGAGCTTTTATTGTTTGAGTTCCCTTATTGGTCTGATTGTGTGCGTTGTTAGAGAAGAGAGACACAACGCTTGGCCTTCCACCAGGTTGCTGAACCCCCTCATGCATTGCTCTTTCTGTTAGGAAGGTAGTTGGACTGAACCCACCGATAGGGGCCAGCCAACGGGACTCCCATTGCACAGCAAGGTGGCTCTAGTATAAGGTTTCACAAATTGTCCGCAGAACTCTGCCAGGGCCCCTGTCCTACTGAGTGCTTcttaccaaaaacaaacactgacccATCGTCAGCAGATCAATAATAAGCTTGAACTTCTGCTCATAGTCATGGCTCTGGTGTAGGGCTGTGTGGTAACAATATGACCTGGGCTTGTACCCCCAACATGCTACACACCTGGAGCATAGCAGAGTGCTGTGCAATGGGAGTCAGATTTTCTTTGCACAGCCCGTTACAACAAACAGGTGCCTAAAAACAACAGAGGGGGTAGCTGTATCAGGGCATCAAGACCCCAAGACCCCTGACTCAAGATCTTCTTGCTAGGCCAGCCTAAAAGTCCTacttaatatatttgaaagaagatattttttattgatcATAGTCttaatctattttgttttgtactttgtttgtaCCGTGATGATTACCTATGCagaactattattattgttgttgttattaatattattatgagtaTTATTAACTGTAAACTACAGCTTAGCTTCCCCTGTAAACCAAACCCTCTCAGTTGCACTATTGGCAGAGGCTTTGAAGGTGCTTAATCTCCCTGAAAACAgaacatatgtttttaatgatgatgatggtggcgACTATTCTTATATGTAATcaaagtctgtgtgtgtacttgAGAGGGTAAAGGGGGGGATGTCTGCCAAAGTCTGTTCAGTGCTGTCTCCATGATTATCATTCATTACTTCTCCACCTGTTTTGTGAGCCAAATCATGTAAAAGTCTAATcgagcttattattattagttcatGTACAGTTTCATTGAAGTACCTAAGGGCTCGTTCAGAACACAAACCAATGGGACACTGGGGCCATGTTACAGGCAGTAGTGCTGGTCAGAGAAGGtgatgtacaaaaacaaaccaaaataaaacatctgatgatttctttttttttttttaatgttgttttcagGTTTGTAGTAAGAACGTTGAGCCTCATCACCGAGTGGCAGATTACAATCTGTTAAATACATCAAGAAACGGAGAAAGCAAAAGTACAATGacaaaactgaaaggaaaattgTGTGAAATGGTGTGTAGCAGCTAATAGCAATCATACTGAGAAAAGTTCAGATAAGGTTGTGCGTCTCTCTAATTTTCATTCTAAGCGGACCATTTATAACATCACAGTGATGAAAGTCTTGTGGCAGATTGTCTATCATTCTCCAGAGAGAGGAGTAATGAATCTGGCTTCACAACAAGGAGGACAAagaatgttttagtttttttgttgagATAGTGATAGTGATAGTCGTTTTACAAGAACAAGTAAATGGACACATTTGCTTATCTTGGGATGCTgccagacacaaacaaaacatgaacataaaTCTCCGTTa

Function

GO:

id name namespace
GO:0044448 obsolete cell cortex part cellular_component
GO:0032156 septin cytoskeleton cellular_component
GO:0031105 septin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130425 True 1810 lncRNA 0.40 2 11532920 11593994

Neighbor

gene id symbol gene type direction distance location
AMCG00011107 NA coding upstream 2191 11527210 ~ 11530729 (+)
AMCG00011109 kcnq4 coding upstream 32650 11499565 ~ 11500270 (+)
AMCG00011106 LOC106588897 coding upstream 42889 11472799 ~ 11490031 (+)
AMCG00011102 NA coding upstream 119968 11399849 ~ 11412952 (+)
AMCG00011101 NA coding upstream 163223 11351902 ~ 11369697 (+)
AMCG00011111 NA coding downstream 44008 11638002 ~ 11642227 (+)
AMCG00011116 NA coding downstream 239850 11833844 ~ 11839029 (+)
AMCG00011122 NA coding downstream 349605 11943599 ~ 11946001 (+)
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding downstream 368404 11962398 ~ 11966995 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding downstream 392868 11986862 ~ 11988912 (+)
G104310 NA non-coding upstream 112854 11418666 ~ 11420066 (+)
G104307 col9a2 non-coding upstream 155835 11372554 ~ 11377085 (+)
G104271 NA non-coding upstream 809030 10723550 ~ 10723890 (+)
G104255 NA non-coding upstream 915724 10555729 ~ 10617196 (+)
G104221 NA non-coding upstream 1660030 9872653 ~ 9872890 (+)
G104443 NA non-coding downstream 250416 11844410 ~ 11844623 (+)
G104444 NA non-coding downstream 250692 11844686 ~ 11845805 (+)
G104445 NA non-coding downstream 251994 11845988 ~ 11846253 (+)
G104479 NA non-coding downstream 320500 11914494 ~ 11917031 (+)
G104480 NA non-coding downstream 323694 11917688 ~ 11918147 (+)
G104273 NA other upstream 713497 10818688 ~ 10819423 (+)
AMCG00011089 csmd2 other upstream 1261057 10203617 ~ 10271863 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 1983400 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 2980315 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 4429412 7071433 ~ 7103508 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 50023 11644017 ~ 11651021 (+)
G104382 NA other downstream 72204 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 214852 11808846 ~ 11810822 (+)
G104435 NA other downstream 248135 11842129 ~ 11844089 (+)
G104550 NA other downstream 472500 12066494 ~ 12067337 (+)

Expression


Co-expression Network