AMCG00011106 (LOC106588897)


Basic Information

Item Value
gene id AMCG00011106
gene name LOC106588897
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11472799 ~ 11490031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011106
CTCGGCTGCAGGCTTTCCAGTCCAGGCACCGAGCGAGCAGCTCTCTGTGCGCCACCTTTTGTTTGTTCCCGGATTGGGGTAGAGCACAGCTCGCCTCCTGCTCTGTCTTCCCTTGCCCAAGGAGACCATTACAGTGCAATGCAGGCTTGGCGGCAGCAgtgggagcagcagcaggacagCTGGAGTGCAGGGTCGGTGTGTTGTGTGGTCCGTGTTGTTCACCCTTCCTCCCCCCGTGCAGAAGGTGCTGTCCTGTCCTTCCAGGGTACAGAGCAAGAGATGGCATGTGAGAGTGAGAGGCCATCAGTTTTAGCCTTTAGTACTCTGCTCTTTGTGGCCATCGTATCGGTAGTGAGAGGGGCCTGTTCTGCTGAGCGCTGTCGCTTTCCTACAACGGAAGTGGAGCGAGAGTCTTCCTTCTATTACAACATCAGGAAGGTTCGAAAGCAGGGGAGACCATGTGACCCAGTCATTCTTGTGCTGCAGCTGCAGGCACCTGGTGTCAGGATGTCAGCGGAGAGCGCGTTTGGAGCGGCGGGCAGTGATGCCCAGCAGAGCCTGCAGTCCTTCTGGCCTCGTGTGATGGACGAGATCAGGAACCTCACTGTGAAGGACTTTCGTGTTCAGGAGCTTCCTCTGGCTCGCATCAAGAAAATCATGAAGCTAGATGAGGATGTGAAGATGATCAGTGCTGAAGCCCCAGTCCTGTTTGCAAAGGCCGCTCAGATCTTCATCACAGAGCTGACACTGCGAGCCTGGATCCACACGGAGGACAACAAGCGCCGGACACTGCAGagaAATGATATCGCAATGGCCATCACCAAGTTTGACCAGTTTGATTTCCTGATTGACATTGTTCCCAGAGACGAGCTGAAACCTCCAAAACGACAGgaGGAGGTGCGGCAGTCTGTGGCACCGGCGGAGCCTGTGCAGTATTACTTCACGCTGGCGCAGCAGCCCGGAACGGTGCAAGTCCAGGGGCAGCAGCAGGGCCAGCAGGCCAACGCATCAACCACCACCCTGCAGCCTGGACAGATCATCATCGCACAGCCCCAGCAAGGACAGGTGTTGCAGGGGACCActgtgcagcagctgcagcaggtgCAAGTGGCACAGTCCCAAGCCACAGCCTCGTCCATCACGAGTGCCCCGGTCACTATGCAGGTGGGGGAGGGGCAGCAGGTGCAGATCGTGCAGGCTgcgcaggggcaggggcagggccAGGCTACCACCGGCCAGACCATGCAGGTCATGCAGCAGATCATCACCAACACCGGGGAGATCCAGCAGATCCCGGTGCAGCTCAACACCGGGCAGCTGCAGTACATACGGCTGGCCCAGCCCGTGTCCGGGACGCAGGTCGTCCAGGGGCAGATCCAGACCCTAGCCACCAGCGGACAGCAGATCTCGCAGACGGAGGTGCAGCAGGGCCAGCAGCAGTTCAGCCAGTTCAGTGATGGACAGCAGCTGTACCAGATCCAGCAGGTGACGATGCCAGCGGGGCAGGAGCTCAGTCAGCCCATGTTCATTCAGTCTACCGGCCAGAGTGCAGATGGCCAGGTCACCACGCAGGTCAGCGCTGACTGAGGTCCACACGGTGCCAATGCTGAAGGCTGAACCGCAGGAGCTTGCAATAACAGACTGGTCCAAAAACAGAGTCCACCCATTTGTCTCCTCTCTCGTTCGCTTTCTTGGCCAATCCCTTTTAATACCTGTCCACACTCTCCCGTCCTGTCATTCTCCTTCCCAGTCACTCTGTttatccctctccctccctccccttcaCACACTGCCtcacccatccatccatccctctctctctctctgatcttCTCACTGTGTTcgtgtgctttatttttttggtctGACTTTGagtttctttaaatattgtatttctttaaatgtccACTGGTAATGGGTACAGGATGCCTTTTTGAGGTGGAAGAACTTTGAACTGAGTTTTTAGCCCATCCAAGACCAGGGATCCAGTGGAGttctgtgtatatacacacacgcacatccagctccctccctccccttgaTACTGCATCTGACCTCTCGCTGTCAGGGCTTCTCGCCTCGCCTCCGGGTCATGGAGAGCTACAGCACAGCAGCGCCCAACACCATTCAAACTGTCCCCCCAAACCCAGGGATGGTTTAGTGccaataaaaatgacattatatttattaggtttttttttatgattagcGTTTCTCTTCACCAAGGATACTGGAGGAGGTTCTCTGACTTGGGGCTGCCAGTATACGAGTGTCAGTAGAGTAGAAATCTTctcatttatatgtatgtattttgttgttgttgggtgGGTGGGTCGGGGGGTTTGATAGGGCTTTGTTAGTTACCTTCAGTTTTTAATCCTGGTTTTCATTGTCCTtacaagaaaggaaaggaaaaaataaaaacgtaatGACACGCTTCTCTGCAGATGTAAACAGTCCGATTTCTGATGTTGACAGGTTTAACTTACTGAAACTGTGAATTTCAgggtaaaacacacaaaacgcCTGCAGATTGTAAAGatagtgtttctttcttttgatcTGAAACCTGATCTGTGGCAGCTCATTTAAACCATTAAGAATGACTAACTTCtctatggttttatttttgaaatactaCATTTTGGAAGAAAGTAGGACACATAGatgtacacattatatataataaaaacccATGTGTCATACTAATCTACtatgcagtgtgtttgttttccaactgCTGACTGAGGCACAGTGTCCTCTTGGCCTCAGATTTTAAACCCATCCAGATAAAGATTAATCGAAAGTAAAATGTTGCCTGCATTAGTTGTATCGGACGTAACACACGTGCTACAAGCaatttgtgacttttttttttttgtttttccttccacgctggtggttttcatttttatagattttatttaaaaaaatgttgcagtTAACTTTTTTTCTACTGCTGACTAAGCAACATTTGACATCTGcacattgttgttttccttgttcTTCTCGGTTTCTTGTGGTGCCCTTTAACTGAAGTTTAATGCTCTCCTGCAGAAGGAATCAGGTGTTGAAATCCGCCTTCCTGCTGGGATTGCGGTTGGTAGGGGAGTGTGTCCGTGTGACGTGGAAGCGAGACCCCAGGGACAGTTATGAAGCATGTGTAGGTGTGATGGGTGGGGTTAGCCTGGCAGGGGAGGCGAGGGGGGTGGGAGATATTACCCCACatgagcagtgcagtgtggttgtTTTAAGGTACGCTAATGGAGGTGGGCCTAGAGCCATGgcatttttctatatatttttttttgtatttgtctaaTTTTAAGCTGTAAATATATGGGGGGTGAGGAAGAAAGTCTGTCTGGATCATTCTCAGATCAGGATACTGCCACACCTTCCTTTTTTGCTCtccccattctctctctcaaaaccCCTTGGTCTCCACAGGGATGGTCGGTCGGTCAGTCCTGGTGCTGGAGAGCCGTGCAGTTTTATAGCCTAACTGTCATTTTAAGTGTTGCCTGCCCCGCCCCTCTATCCCGcctcctggtttttgttcctgCGCCATCTCGGTCAGACCCTTAATCAACCTAAATTCTTGAATCACGTTTCTAGTATGACGGTCGAGTCTTTTGCAGTTCCCAGCCTAAAACATGACTTAGATTTCATGACACCTGCTGCCTGCCAGCAGTGAAGCGGCACACGACCCGCCCAGCCAGGCAGGCCCGATGAGGCCTAAGCGGAGAGCCCCGGGTCGGGACGAAAGCCAGTGGGCAGCGACACCCTCGCTCGAGACCCTGGCGGTAGAGTGGGAGGAGTTGGAGCAGGACGGTTTCTGGAAACGCTGATTTGAAGTCAATGGATCAGTCACTGCGGTCCAGATTTCCCTCCCTGCCTCCGATTTGTTTAAAGGCCCAGATGAAGCCTCCAGGATGTGCTCTCCAGCCATGCCTCTCCACCCATTTTATAATgttgatatttgtattaaatgtcttgtatttttttttttctccacttttGGATCTcccacttttttttctaaattgtacctataattatttttgtatcattgttTTGCATGTAGTTTAAACTGCCAGCATGAAATGCAATAGATCTTTATATGCATTGTTTCACTGTCTACTAAGTAtcccagctttttttttttcttccccctttttcatttgggagaaaataaaaggcaaaaagAA

Function

NR:

description
PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X9

GO: NA

KEGG:

id description
K08066 NFYC, HAP5; nuclear transcription factor Y, gamma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011106 True 4211 mRNA 0.50 15 11472799 11490031

Neighbor

gene id symbol gene type direction distance location
AMCG00011102 NA coding upstream 59847 11399849 ~ 11412952 (+)
AMCG00011101 NA coding upstream 103102 11351902 ~ 11369697 (+)
AMCG00011100 NA coding upstream 125788 11303064 ~ 11347011 (+)
AMCG00011099 adgrb2,LOC106931923,LOC107082735 coding upstream 219951 11219888 ~ 11252848 (+)
AMCG00011098 adgrb2 coding upstream 300828 11136716 ~ 11171971 (+)
AMCG00011109 kcnq4 coding downstream 9534 11499565 ~ 11500270 (+)
AMCG00011107 NA coding downstream 37179 11527210 ~ 11530729 (+)
AMCG00011105 kcnq4 coding downstream 52957 11542988 ~ 11552978 (+)
AMCG00011108 NA coding downstream 84509 11574540 ~ 11587206 (+)
AMCG00011111 NA coding downstream 147971 11638002 ~ 11642227 (+)
G104310 NA non-coding upstream 52733 11418666 ~ 11420066 (+)
G104307 col9a2 non-coding upstream 95714 11372554 ~ 11377085 (+)
G104271 NA non-coding upstream 748909 10723550 ~ 10723890 (+)
G104255 NA non-coding upstream 855603 10555729 ~ 10617196 (+)
G104221 NA non-coding upstream 1599909 9872653 ~ 9872890 (+)
G104326 NA non-coding downstream 42889 11532920 ~ 11593994 (+)
G104443 NA non-coding downstream 354379 11844410 ~ 11844623 (+)
G104444 NA non-coding downstream 354655 11844686 ~ 11845805 (+)
G104445 NA non-coding downstream 355957 11845988 ~ 11846253 (+)
G104479 NA non-coding downstream 424463 11914494 ~ 11917031 (+)
G104273 NA other upstream 653376 10818688 ~ 10819423 (+)
AMCG00011089 csmd2 other upstream 1200936 10203617 ~ 10271863 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 1923279 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 2920194 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 4369291 7071433 ~ 7103508 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 153986 11644017 ~ 11651021 (+)
G104382 NA other downstream 176167 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 318815 11808846 ~ 11810822 (+)
G104435 NA other downstream 352098 11842129 ~ 11844089 (+)
G104550 NA other downstream 576463 12066494 ~ 12067337 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_01818544_01824351 NA coding CI01000054 null 1818436 ~ 1824351 (-)