AMCG00011101


Basic Information

Item Value
gene id AMCG00011101
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11351902 ~ 11369697 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011101
CCCCCACTGCCGCCGCTCGCAGACTCCGCTCTGAAGGTGAGGACCCAGGGACGACACGCGCGGAGTGTGCCGGATCTATGTGGCGACTGCTCCCAGGGGCTGCCGGGGGTTCCCGGGGTTACGGGGGTCAAGGGGGAGAAGGGGGAGCAGGGACAGCCTGGGACGGGAGTCGCGGACGACTGCCAGAATTGCTTCGAGAGGCTGCAGAAAGAGGAAGCTAGGGGGGACAACAGCAATACGGGTGGGCCCTGCCTGGCGGTGCCAGGGACACCCGGGATCCCCGGACTTcagggagagaagggagagcAGGGTCCCCCAGGTCAGAGAGGGTTTGCAGGTCCCCCAGGACCACTTGGTCCTCCAGGTTTCCCTGGTTCTCCAGGTCCCGCTGGATTACCGGGGCAGCAGGGGGAGCGAGGCCTGCCTGGATCTGATGGGGCCAAAGGAGAGCAGGGACCACCTGGGAACCCAGGGTACCCAGGATCGATGGGACCTCCTGGCCTACATGGTCTGAAGGGAGAGCGCGGGCAGCCAGGCACTGTGGGACAGAAAGGCGAATCGGGCCCACCAGGATCACCAGGGTACCAGGGGCAGCCAGGACCAGCGGGGCCCAAGGGTGACCATGGACCCTCCGGGAGCCCAGGCCTGAAGGGCGATCAGGGCCCCCCCGGCTTCCCTGGAAAGGCAGGCTCTCCCGGATCTCCTGGACCCTCAGGAGAGAAGGGCAGCGAAGGACAAAGGGGCCCCCAGGGACCTTCAGGCCCCCCCGGCCCAGCTGGTCCCCCCGGCATGCAAGGTCCTCCTGGGATTGAGGGCATGGACGGGAAGGACGGTAAACCAGGACCCAGAgGGGAGCCTGGTCCGATTGGTCCCGCTGGTCCACGAGGCATGCCAGGATTCAAGGGCAAAACAGGACACACTGGATTCCCAGGACAAAAAggcgaTGCTGGGCCTCAGGGACCACCTGGAGCTGCTGGGAGGCCTGGCGTTGAGGGTGACCACGGGAACCCTGGACCTCAAGGGCCAGCTGGACCACCTGGGCACTTAGGACCAGCTGGGCCAAtgggccctccaggaccagcaGGGTCCCCAGGACTGGGGATAAAGGGAGAGAAAGGCCAGAATGGAGAGAGGGGCCTCCCAGGAATGGGGGGACAGCCAGGTGCCCCTGGACACCCAGGACTGGCTGGAGAGCCCGGCAACGACGGCACACCAGGGAAAGATTCCAGGACAGTCTGGGGAGAATGGAATGCATGGACAGAAGGGAGAACCAGGCACTCCCGGACTGAAAGGAGCCCCCGGCGAGCGCGGCCGCCCTGGGTTACCAGGCGGCTCTTTGAAAAGCGACTCCGGGATGGGAATGATGGGTCCAGTGGGGCCACGAGGAGAGAGGGGCGCTCCAGGAACTCCAGGTCCTTCTGGGACCCCAGGCATCCCTGGATCACCGGGGCCAGCGAGCGCATGGCCTACTACATGTCCCGAGTGCAGCTGCCTGTGGAGATGGTGGCAGCTCCTGGCCGTCCTGGCCCCCCAGGGAAGGACGGTATCCCTGGCAGGCAGGGGTCTGCAGGGATGCCAGGGATGCCAGGTCAGATCGGGAGAGAGGGGCGGCAGGGCCCCATGGGACCCCCCGGTGCACCTGGCAGTAAGGGAGAAAAGGGAGATAAAGGAATAGGAGTGATGGGAGACATTGGACCCCCAGGAGCCCCAGGTCCCCATGGTCAACCAGGCTATGGCAAGGTGGGTGCCCCAGGTCCAGTGGGTCAGCAAGGGATCCCGGGAGTGCCAGGCCCTGCCGGGAACCCAGGGCAGCCTGGGAAAGAGGGCCGCTGCAACCCCTCTGACTGCCTCAGCATGATGCCCATGGAGCAATACCCCTCCAAGAGCATGAAGGGGCCGATGCACTAGGAGAGATGttgggagagcgagagagagagagaatgcacaAAGAGaacatcatatttttattttattttttttacctttttttttgtctttttttttcttctttttatacCACGGACACCAAAAATTAAACGATACGTGCAATGCAGAAAATCAGTAATTATTCAGTTCCTGGACACAAAACCCTGTCCCTTTCCCTTCCTGCTGGATCGGTGAGCTGGTTTGCAGACAAATCAAGTTACCAAGTGTTGTGACATCAGCAGTCTGGCTGTGGAGAGGGCCGGCCCGTCTCGCTGCCCTGTGGCACAGGGCAGTGCAGGGCACAGACCAGCCCGAACACTCAGAGTGACATACAGAGGAGATGGCGAATTAGcccttaaaaacattttttttaaagtgtatattttttttatcaagcaTTTTTTTAAGGCTACTTCTTTGGAATACTTCTCTAGCCCTCGTCGATTTTTGCTTTCTACTTGTACAGTCGTCTAAATTTCTTTTGCAAGCAGGAGCTAAATCTGTATATTGTAGGAAATTCATGTTTCAGTAATTCTGAGGTAATCTCCTGTGCTAGTGTGCACTTTATGTGCCCTGTTTTATACATGTACAAgtgaacacactcacacacgcacacacacgcacatatttGTCAAATAACGAAGCAGACACCATGTATTGATGATGCATGCGTGTATGAAAGACCAGTCCCTGTCATGAGGACACACATCAGTTGACATTTACAGCTGTGTCACACTGTAAAAACAGAGTGAGCTGTGGATCTACACACCAtcacatttttctattatttgtaccaacaatgtctttgatactTGTAGCATTCCAACATGTACCTCCTACCTTGTTTAAACCACTATGCAAAATAGTAGCAGTAGGAGTTCTGTGTGAAAGACCTGGACTTACGCAGGGACCCAGAGAGAAGTGTCAGATCTCGATGGGGTTCAGAGATGCACACCAAAAGCAAGCAGCTCAGTCATTCTTCCTTGCAGAGGGAGGGGTGAGATGAGGACATGGCTGCCACGTCCCAGTCCCTGCAGTCTGTTATATATAGTCtctaaaaactttaaaaagacacattgtTTTAGTAAAGTGAGTGGGACCTGcggtgtacatatttatattcatattcctGAGTATTTTACAAGGTGTTTAACAGCCAGCAGCCTTTTCCTATCCCCCTCATTGCTCATTCTCCATTCTCACCAGCCCTGGGTTCCCAGCCTTTCAGAAAGAAACACATATTTGAtaagcaattcatttttaaagcttgtctttcaaaattatttttaggattttttGTTCAATTCCTAGAACTGTCGTTTATTGATTGTACAGTCACAGAGTAATGGGTTATCTTTGTCAGACATGATCTTGCAGGGGGAGTCTTTGTGTTGTCTGTATCTATGAGCCAAACTGCTAGACCATTGCTCTTAATACAGCCTATAGCCCCTGTCTTCTCATTGTATTAGTTTTAAAGTAGAGATTTTTTATGCCTTTCTGAAATGTCACATCTTTGTTGTAACAGCGCTTGTTTGCAAGTAACACACTTGAATTGTACTGTATTCACTACCTGCGACCTGCAAGATCTCCTGACCTCTGCAATTGCATTCCATGTGTGTGTCAAGGCCGGTGTAAAAGCCATCAATCAACAAggatatttttacttttatttttttattatggaaactgaaacaaaaccaagcaAAACGAATATGCAACAAAAAAGCTAATAAATATTTTGAGCAAAGTTGAGTGAAATCAAGGCTCTTAATTCTCTTGGCGTCTGCGctgcaatgtatttaaaaataatggtgACGGTTGAACAAACCGAAGGTGCAAATCTCTGTTTTTGTCCGTGTGCCATACCAGCCAGCACAACCCACAAATCCTGATATGATGAGGGGAAAGCACTGTGGGCCAGATTGAGGTTTTGCAAACTACCCAAGCTATGGAGTTGACTGTGTAGTCAATTtctatgtaatatatatttgttatttttaaatcaacaatttATTTAGCCCTCAGTGATATACATGTGTGCGCACGcgagcgtgtgtgtgtttgtgcatgtgtataaatatgtatagctGCTGGCAGCAGGAACCCGAAGACTGCTTTGGGCTCCTCCGAGGGAAGTTGGCGAGTTCTGTCTGAAACAGTTGCACTCTTGGGGTGAAGGGGGTTGAAAGAGTCCAGCCACAGTAAAATCAAGGCACTTTGACATAGCAATACTGCAGCTgtgacaaaacaccaagcacaggACTGAGCCGGCAGAAACATCACAGCGATATTACCAGTATGAACGGAAAAGCTGGACGATCAACTTTGTACACCAACTGGATCTAATGATAACTGCACCACTGTCTGATGGGCTCACTCACACATTGAGCTTAGCAATTGAACTTACTTGATACAGATGTGATTGCAGGTTAATTTTGTAAGATTGCACCTGGTGtctgttaaatacattatagtAAACCACATATATTGTTGCTGCAGTGCAGAAGTGAGCCTGAATATTTTCTCTAAGGGCATCTTTATTGGGTTTTGCTGTCATTGTTTAGGTTTTACATTGTCATTTATAAGCTATGTGGTTTCATTTCAAGTGGtttactatattatattattttgtttattttttatatgtattctgCCAATCTTCCAAATCTGTATATCTGAATTTGGGATCCAAATGTCTGTAAAGTTTCCCTGGCAATTAACAACAggagatgtatttaaataaatcttaaatattttaatcatatttagTTTCTTCTCGGCCATCTTTGTATTTCAGAACATCCTGGGATTTTCCTCCAAATTTGCGGTTGTTTGATAAAGATCTGAGAATTGAAAACTCAGACCTCTAGCCTGCTAAAGCTACATCATaggtttttcagattttt

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011101 True 4832 mRNA 0.50 26 11351902 11369697

Neighbor

gene id symbol gene type direction distance location
AMCG00011100 NA coding upstream 4891 11303064 ~ 11347011 (+)
AMCG00011099 adgrb2,LOC106931923,LOC107082735 coding upstream 99054 11219888 ~ 11252848 (+)
AMCG00011098 adgrb2 coding upstream 179931 11136716 ~ 11171971 (+)
AMCG00011096 NA coding upstream 227849 11093835 ~ 11124053 (+)
AMCG00011097 NA coding upstream 258074 11039056 ~ 11093828 (+)
AMCG00011102 NA coding downstream 30152 11399849 ~ 11412952 (+)
AMCG00011106 LOC106588897 coding downstream 103102 11472799 ~ 11490031 (+)
AMCG00011109 kcnq4 coding downstream 129868 11499565 ~ 11500270 (+)
AMCG00011107 NA coding downstream 157513 11527210 ~ 11530729 (+)
AMCG00011105 kcnq4 coding downstream 173291 11542988 ~ 11552978 (+)
G104271 NA non-coding upstream 628012 10723550 ~ 10723890 (+)
G104255 NA non-coding upstream 734706 10555729 ~ 10617196 (+)
G104221 NA non-coding upstream 1479012 9872653 ~ 9872890 (+)
G104204 NA non-coding upstream 1605038 9693144 ~ 9746864 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 1870228 9477567 ~ 9481674 (+)
G104307 col9a2 non-coding downstream 2857 11372554 ~ 11377085 (+)
G104310 NA non-coding downstream 48969 11418666 ~ 11420066 (+)
G104326 NA non-coding downstream 163223 11532920 ~ 11593994 (+)
G104443 NA non-coding downstream 474713 11844410 ~ 11844623 (+)
G104444 NA non-coding downstream 474989 11844686 ~ 11845805 (+)
G104273 NA other upstream 532479 10818688 ~ 10819423 (+)
AMCG00011089 csmd2 other upstream 1080039 10203617 ~ 10271863 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 1802382 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 2799297 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 4248394 7071433 ~ 7103508 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 274320 11644017 ~ 11651021 (+)
G104382 NA other downstream 296501 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 439149 11808846 ~ 11810822 (+)
G104435 NA other downstream 472432 11842129 ~ 11844089 (+)
G104550 NA other downstream 696797 12066494 ~ 12067337 (+)

Expression


Co-expression Network