AMCG00002667 (rnf19a,LOC102791892,LOC107698652,LOC106570794)


Basic Information

Item Value
gene id AMCG00002667
gene name rnf19a,LOC102791892,LOC107698652,LOC106570794
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25556983 ~ 25573560 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002667
TTTCTTTCAGACACCTTTTCAGGATACTATACTCTCTCCCTGGAAACAGAGTGCACCTTGAAGTGGTGCACAAGATTGAATGAGGTGATCGGCCTGCAGGAGAAGCCAAAATGTCTTAAATCCTGCAATTTTGTACTGGAAACCCTGTCCCCCCATCCCCAACCCCCTTCCCTTACCCCCCTCTgtacccctccctccctccccgcTCACAGCCCCATAGATGTGACCCACACAGAGCAAAATTTGGCGCATTCTCAAGACATGAGTCTGCAGAAGCACCAGCAGATGGGCTCTGACCGAGACCTTCAATCTGCTGCCTCCTCCATCAGCCTGCCTTCAGTAAAAAAGGCGCCCAAGAAGCGCCGCATCTCCCTCGGCTCTTTCTTCCGGCGCCGGAAAGAGACCAAGCGCAAGTCACGCGAGCACAATGTAGGGGTGGACGGCATCGCCAGCATCGAGAGCATCCACTCGGAGATGTGCAACGACAAGAACTCAGCCTTTTCAGTGGCAGGAGTGGCCTCCACCTCCTCggctgctgccgccgccgccgccgccgcctcctcctcctcctcctcctcctctgcctcctcctcttcctccaagACAGGCGGGGAGCTGTTGGAATGCCCGCTGTGCCTTCTGAGACACTCTCGGGACCGCTTCCCAGAGATCATGACCTGCCACCACCGCTCCTGCGCTGACTGCCTGCGCCAGTACCTGCGTATTGAGATCTCGGAGAGCCGCGTCAACATCAGCTGCCCTGAGTGCTCTGAGCGCTTCAACCCTCACGACATCCGCATGATCCTGGGCGACCGCGCGCTCATGGAGAAGTACGAGGAATTCATGCTGCGCCGCTGGCTAGTGGCTGATCCAGACTGCCGCTGGTGCCCTGCGCCTGACTGCGGATATGCGGTCATTGCATTCGGCTGTGCCAGTTGCCCAAAGATCACCTGTGGGCGTGAAGGATGTGGGACCGAGTTCTGCTACCACTGTAAGCAGATCTGGCACCCCAATCAGACGTGTGATGCTGCCCGGCAGCAGAGGGCCCAGAGTCTGAGACTGAGAACTATCCGTTCCTCCTCCCTCAGCTACAGCCAGGAGTCCGGGGCTGCAGCCGACGACATTAAGCCCTGTCCAAGATGTGCTGCTTACATTATCAAGATGAATGATGGGAGCTGCAATCACATGACATGTGCGGTGTGCGGCTGCGAGTTCTGCTGGCTCTGCATGAAGGAGATCTCTGACCTGCACTATTTAAGCCCATCAGGATGCACATTTTGGGGCAAGAAGCCCTGGAGCCGCAAGAAGAAGATTTTGTGGCAGCTGGGCACTCTGGTTGGTGCTCCGGTGGGGATCGCGCTGATTGCTGGCATTGCAATTCCAGCTATGATCATTGGTATCCCCGTGTACGTGGGGAGAAAGATTCACAATCGTTATGAAGGAAAGGATATCTCAAAGCACAAGAGGAACTTGGTGATTGCAGGTGGTGTGACATTGTCTGTAATAGTTTCTCCCGTGGTGGCAGCAGTAACTGTCGGCATCGGAGTGCCCATAATGCTGGCCTATGTGTATGGGGTGGTACCCATCTCCCTGTGCCGCAGTGGAGGCTGTGGGGTGTCGGCAGGCAATGGAAAAGGAGTTCGCATCGAGTTTGACGACGAGAACGACATCAACGTTGGAAGCGGAACTGCTGCTACCGACACCACCTCGGTAGCAGAAACCCGCAACAACCCCAGTATTGGAGAGGGAAGTGTGGGGGGCATGACCGGGAGCCTGAGTGCTAGTGGCAGCCACATGGACAGGATTGGTGGCATCAGAGACAACCTAAGTGAGACGGCCAGCACCATGGCCTTGGCTGGAGCCAGCATCACGGGGAGTCTCTCTGGGAGTGCCATGGTCAACTGCTTCAACAGGCTTGAGGTGCAGGCAGATGTTCAGAAGGAACGCTACAGCCTGAGTGGGGAGTCGGGCACGGTCAGTCTGGGGACAATCAGTGACAATGCTAATGGGAACAGTATGGAAGTGCAGGTGGACATTGAGTCGAAGCCGGTGAAGCTGCGGCACCACAGcgggagcagcagtgtggacgATGGCAGCAACCCTGGGCGCAGCGGGGCAGTGTGCCCCTTGAGCTGTCCTGCAGAGAGCAAGTGCGGCACTGCCAAGTGGGCCAAGGATGGCACAGCGGGCAAGAAGTGTAAAGGCAAGTTGAGGAAGAAAGGCAGTACCAAAATCAACGAGACCAGGGAGGACATGGACGCCCAGCTGCTGGAGCAGCGCAGCACCAACTCCAGCGAGTTCGACTCCCCCTCGCTGAGCGACAGCATCCCCTCGGTGGCAGATTCCCACTCCAGCCACTTCTCCGAGTTCAGCTGCTCCGACCTGGAGAGCATGAAGACGTCCTGCAGCCACGGCTCCAGCGAGTACCACCCCCGCTTCGCCACCGTCAGCCCCCTCCCCGAGGTGGAGAACGACAGGCTGGAGAACTGCCCCTCCCAGGGCCCCCTGTCCCCGGCCCCCCTGCCCTGTCCTGAGGTCACACCACTCTGTTACATCGCAGAGGAGAATGTCAATGTTGTGAATCCCACGGAGGTGGACTCCACCTCTGGGGATGCCCAAAaagaaaccaacaacaacaaccccccACCGCCCAGCGCTGTGAAGAACACTTGTATTCAGACTGAAATATAATACCTTAAGTGCTGCCAAGACCCCTCTATTTAAACTTGTCACTAACCACCCCAGCTAACAGagttaactttctgtttttaagagGTTCATTCACCCGGTGAAGGGagctggtgtttttgtttggcaATTTCTTTTAAACCAGCTTTTTCCCTCTCTCATAGTATCTTGGTAACAGGGTAGAGTACAATGTACAGAACACAGTTCTTTAGGTGGCAGATTTAAATGAGTGATGCAGAAATAGAGAACCAGAGATGCAGGCTTTATTTTGTGTCTTCCTTTCCCCCCCAACTACCCTACTGCTGCTTGAATGTCTTTGAAGTCTTTAGACGGCGTTAAAAACGCTGCATCTCATTGCCACTGCAGAAATCTGAAATTGGCCTCTCAAAAATCATGCTAGGGGTTTGCCCATCCTGCTGAGTTCATTTCACAGAATTGCATCCTCAGAGTTGTGCTGTTGACATTGAAGCTCTCAGCATTATATTGTGTAGTTAAAGACGACCACTGTGCCACTTTTTTTACATCCAGTCAAACTCATCAGTGGCATTGCACCACGACAGAAGAATTGTCAAGCTCTCCAAATATGTGCAAGTCAAAATTAATAGGGACCAGGCAATGCTATTTTACCTTAAGACTCTGTAAATGATAGActaattttatgatttttttttaattttttttttttctcctttttgaaAGTATGGTTAACAGAAATGGCAGGCCCTCCGTGAAGCGAGTCTGGGCTCCTGCCTGGCTGTGTGGATACCTGGGAGGGAAGCTCTGGTGGCAGCATTGGTGCTACTCACATGTAGTTAGACTGGTAACCCTTTTGATTCTGAGAAAGGCCAGGAAGTGCCCTCTTAtgtgaaattaaagcacagcaCCGCTAGCCTCGAATGAGACAGAGTGCACAGCAAAAGAACAAGTCTCCTAACAGGACATCGCCTGATCTGTAGGAATCAAAAGGGTTTGACTCCTTGAATTGTAATTTATGACTCTAGATGAATTCAGTTCAAAGGCAATTATTCAGGCTGATGCATTCACCTCACAGAAATAAGATTGACTTTTATATCTTTGTTGACTCATGGTGCCTTTgaacagctgtttttgtttgttctccattCTTTGTGTCTTCGGGAGTTTTTCAATGTTTGGCCGAATGTCTTTCTGACTGTGTTGAGAGAGATGCTACAGGTAGTTACATATTGTGGTAGACATAATGAATAAATGACTTTAATTGCCTACCAAAGACAGCACTCAGGCTTTACATGCATCTTATTCCTGTAACACTTAATGAAGTCTATTTGGCAGTGTGAGGATAGACTGAAAGCTCAGTGCAGTTGTGGCACAATCCTTACCTGAGGAGATGATCCAGGAATATACAGATGGCTGTTTTGTATATGCTTACAGATGCTACGCAAATAATTCAAGCCAGAGATGGCCTAGGCACCTGCACTGTTAAAcatgtaattacattaatgtaCTGCAATTCAGAAACCTGTTGGGATACAGTTGTCAAGATTAAACTGTTGTTCTGTGTTTCCTGTTAATGTTGCCATTTTGGTGCTGCTGAATGATAGCTCTGGACTGATGAAAATGCCACAAGCTGCAGACTTGTTTTCCTCCTGTTTCTTTACTTTGAACACTAGTGCCAGGTATCATTTCTAATTTGTTGCAGAGCAGCTTAaggtatttgtatatttgtttgctaATTTGCTTTATAATATGCGTGTAAATGCATatctaaaaattaaaattata

Function

symbol description
rnf19a Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF19A (ring finger protein 19A, RBR E3 ubiquitin protein ligase).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF19A-like

GO: NA

KEGG:

id description
K11972 RNF19A; E3 ubiquitin-protein ligase RNF19A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002667 True 4449 mRNA 0.51 9 25556983 25573560

Neighbor

gene id symbol gene type direction distance location
AMCG00002664 NA coding upstream 50701 25459801 ~ 25506282 (+)
AMCG00002663 LOC103371419 coding upstream 101209 25447921 ~ 25455774 (+)
AMCG00002662 ywhabl,LOC105896388,LOC102785026,LOC100692314,LOC107570839,LOC103145058,LOC105016475 coding upstream 123115 25413831 ~ 25433868 (+)
AMCG00002658 ncalda,ncald,LOC100692199,LOC105901278,LOC103042493,LOC106931336,LOC108268956 coding upstream 258815 25279992 ~ 25298168 (+)
AMCG00002659 NA coding upstream 422719 25129616 ~ 25134264 (+)
AMCG00002668 NA coding downstream 36134 25609694 ~ 25618765 (+)
AMCG00002669 NA coding downstream 48765 25622325 ~ 25645029 (+)
AMCG00002677 stk3,LOC103394381 coding downstream 452985 26026545 ~ 26030667 (+)
AMCG00002676 stk3,LOC100711192,LOC103135175,LOC106938036 coding downstream 467727 26041287 ~ 26044337 (+)
AMCG00002675 stk3,LOC107724280,LOC107702102,LOC105907728 coding downstream 491061 26064621 ~ 26075449 (+)
G125022 NA non-coding upstream 100096 25456656 ~ 25456887 (+)
G125011 NA non-coding upstream 228122 25328180 ~ 25328861 (+)
G125005 NA non-coding upstream 253828 25299701 ~ 25303155 (+)
G124999 NA non-coding upstream 417711 25138980 ~ 25139272 (+)
G124965 NA non-coding upstream 593503 24945238 ~ 24963480 (+)
G125109 NA non-coding downstream 280598 25854158 ~ 25862306 (+)
G125220 NA non-coding downstream 799019 26372579 ~ 26376125 (+)
G125288 NA non-coding downstream 1080425 26653985 ~ 26655168 (+)
G125290 NA non-coding downstream 1081679 26655239 ~ 26655457 (+)
G125296 NA non-coding downstream 1088164 26661724 ~ 26662436 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other upstream 172671 25374942 ~ 25384312 (+)
AMCG00002650 NA other upstream 780168 24761884 ~ 24776815 (+)
G124863 NA other upstream 1134370 24422252 ~ 24422613 (+)
G124769 NA other upstream 1875598 23677935 ~ 23681385 (+)
G124689 NA other upstream 2266448 23152648 ~ 23290535 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 701754 26275314 ~ 26279137 (+)
G125219 NA other downstream 788652 26362212 ~ 26369525 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014622 rnf19a coding NC_007130.7 CM002903.2 12030832 ~ 12078583 (-)