G124689


Basic Information

Item Value
gene id G124689
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23152648 ~ 23290535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU156281
TCTTCTAGATCTCCTGATGACTGGCAGCAGCTTCACACAGCCTTCTTCTGTTCTGCTGAACTTCCTCAAGTCAAACTCATCTAACGACTCTTCTGATGTCAGCAGCACAAACACCAGTGCTGACCACTGTTCAGATGAGAGCTTTCTTCCTGAATGACTTCCTGAGCTCAGGAAGCTCTTGATTTCTTCCACTAGAGAATTATCATTCAGTTCATTTAAACAGTGGAACAGATTGATGCATCTCTCTGGAGACTTATCCTTCTTAATCATCTTCTTAATGTAATCAGCTGTGTCCTGGATGCTCTGGGAAATGCTCTTTGGCTCTGTCAAAAATTCACTCCACGAGCTGCTGATTGTGCTTAACAGCCATCCTCTCCATGAGCTGCTGTGTGTCGGTGTCAGTAGTTCTCTGTGTGAGCTGCTGTGTGTCAGGAGGCCTCGTAAGAGAGTCTGATTGGACTCCATTGAGATGCCCAGAAGGAAACGGAGGAAAAGATCCAGGTGTCCATTCTTACTCTGTAAAGCCTCATCCACTGCACTCTTGTACAAGTCTGACAATTTCACTGTCTTGTCATTTGTATGCTTTTTGTTAAatagatttagattttcatttttatatgagAAAAAGACATGCAAAGCAGCAAGATATTCCTGAATGCTCAGGTGTACAAAGCAATACACTTTTTGCTTGAATATTGCTGATTCCTCTTTAAATATCTCTGTGCACACCCCAGAGCACACTGAAGCTTCACTGACATCAATGTCGCACTCTCTTAAGTCTTCTTTATAAAAAATCAGATTGCCATTTTGAAGGTGTTTAAAGGCCAACTTGCACAGTTTCAGGATATTGTCCTTCTCTGACTCTAACAGGTTCTGTGTGCTTTCCTCAGTTCCACAAAGATACTTCTTATTCTTGATACTGATCAGAAGGAGCAGGAAGTGTGTGTACATTCCAGTCAGAGTAGTTGGGATGACTCCACTGCTCGCCTCTCCCAACATTCGCTGCAGAACAGTGGCTGAGATCCAGCAGAAGACTGGTATGTGGCACATGATGTGGAGGCTCCTTGATGACTTGATGTGTGTGATAATGGCCCTGGCCAGGTTCTGATCACTGACTCTCTTCCTAAAGTACTCCTCTTTCTGCTCATCATTGAACCCTCGAACCTCCGTCACCTGGTGGACGCACTCGGCAGGGATCCGACTGGCCGCTGCTGGCCGGGAGGTTATCCAGAggagagcagagggaagcagatTTCCCCTGATGAGGTTTGTCAGCAACACATCCACAGACATTGACTGTGTCACATCATGACACATCTGATTGTTCTGGAAATCCAAGGAAAGACGGCTCTCATCCAGGCCATCAAAGATGATCAAAACTGTGTATTTACCAGACTCAAGATCTCCAGCCTCTTTCAGTTCAGGGTGGTAGTAGCACAGAAGTTCAATCAGATTATATCTTTCTTTCCTCATCAAATTCAGGCCACGAAAAGGCAGAAAGAATATGAAGTGAATATCCTGATTAGCTTCTCCAGTTGCCCAGTCAAGGATGAACTTTTGCACAGACACTGTTTTTCCAATGCCAGCAATCCCCTTCGTCAACACAGTTCTGATTTGTTCTGACAGTTTTTCTTGCCCAGATAAgggtttaaaaatgtcattGCATTTGATTGGagtctcctgtgtgtgtttcttcttgATTGCCATCTCAATCTGCCTCACCTCATGTTCATTATTGACCTTTACACTGTCACCCTCTGTGATGTAGAGCTCTGTGTAAATACTATTGAGGAGGGTGCGCTTCCCTGACTCAGCTACGCCTTCAAAGATGCATTCAAACCTTTTCTTCAGGATGGATTTATGCTTCACTTGGACTGTTTTCAGTGATCCATCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156281 True 1896 TUCP 0.44 2 23152648 23290535

Neighbor

gene id symbol gene type direction distance location
AMCG00002620 NA coding upstream 84848 23056782 ~ 23067800 (+)
AMCG00002624 NA coding upstream 96932 23043824 ~ 23055716 (+)
AMCG00002619 NA coding upstream 119063 23028636 ~ 23033585 (+)
AMCG00002621 NA coding upstream 153163 22996873 ~ 22999485 (+)
AMCG00002613 NA coding upstream 200820 22947203 ~ 22951828 (+)
AMCG00002630 NA coding downstream 117031 23407566 ~ 23407966 (+)
AMCG00002631 NA coding downstream 362437 23652972 ~ 23677437 (+)
AMCG00002635 lrp12,LOC107754924,LOC107714470,LOC107689529 coding downstream 677043 23967578 ~ 23985386 (+)
AMCG00002637 dpys coding downstream 706712 23997247 ~ 24007711 (+)
AMCG00002636 dpys,LOC107686378 coding downstream 728969 24019504 ~ 24036531 (+)
G124668 NA non-coding upstream 140648 23011435 ~ 23012000 (+)
G124667 NA non-coding upstream 149396 23002991 ~ 23003252 (+)
G124666 LOC106595597,LOC106595600,LOC106597717,LOC105016543 non-coding upstream 150416 23001788 ~ 23002232 (+)
G124658 NA non-coding upstream 160888 22990571 ~ 22991760 (+)
G124601 NA non-coding upstream 239969 22859923 ~ 22912679 (+)
G124740 NA non-coding downstream 131438 23421973 ~ 23436320 (+)
G124750 NA non-coding downstream 316002 23606537 ~ 23606839 (+)
G124770 zfpm2 non-coding downstream 391478 23682013 ~ 23682226 (+)
G124774 NA non-coding downstream 539135 23829670 ~ 23829984 (+)
G124783 NA non-coding downstream 697167 23987702 ~ 24004361 (+)
AMCG00002622 NA other upstream 162484 22987545 ~ 22990164 (+)
AMCG00002573 NA other upstream 2819618 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 4019081 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 4024701 19073693 ~ 19127947 (+)
G123989 NA other upstream 4314117 18832014 ~ 18838531 (+)
G124769 NA other downstream 387400 23677935 ~ 23681385 (+)
G124863 NA other downstream 1131717 24422252 ~ 24422613 (+)
AMCG00002650 NA other downstream 1471349 24761884 ~ 24776815 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other downstream 2084407 25374942 ~ 25384312 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 2984779 26275314 ~ 26279137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028168 si:ch211-133h13.1 coding NC_007115.7 CM002888.2 67994238 ~ 68018537 (+)
grasscarp (Ctenopharyngodon idella) CI01000212_00330620_00334254 NA coding CI01000212 null 330620 ~ 334419 (+)