AMCG00002635 (lrp12,LOC107754924,LOC107714470,LOC107689529)


Basic Information

Item Value
gene id AMCG00002635
gene name lrp12,LOC107754924,LOC107714470,LOC107689529
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23967578 ~ 23985386 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002635
CGGGACCCGGCtgtaataacacacacaactgtagtTGTAGGTTCAGCTGTTTGGGCCCTGTACAACAGGGGCTAGTTCTACTTTACAAATCAGGACTAAACAGCAATACATCAAAGGGTTTTAATTGGCTCCAAACGGACTCGGTAACATTGTTGCTACGGGGGGGGGgtttgtttatgatttaaagtgtgtttttgtttcagttttattgttcCTGCCTGACGCCGGAATCGCTACTTCTAGCCTCAGACGAAACTGTGTAGGCGTCACAGGGGACGGGAACTCAAAAGAAACGGCTCGATCGCTCGTATTGGCAAATCTCGAAAAGGCAGGATATTTGTGTcgggggctgtgtgtctgtctgcaggcTTGGGTCGGAGTTGTGTTGGCTGTCAGCCGTCATGGCCAAACGCACGACTGGAGAATAGGAGCACAAAGGGAGAAGGACGGGACCGGGGGACTCTCCCTTTGTCTTTCACGCCGCTGTACAATGAATGAATTCGGTGGTGCTTTTGCCTTATTTTAGTGCAGCTGATCTCACTTCATGGTAAATTGATCATGGTGTGTGTACTGTAGATAGCAAGAATAGGGATAGACTAGatagcagtgccatcagctaaACGTGTGTGGGTTATTACCATACTTGGGCTGCTTTGTCTATAAGCTCCATACACAGTACTAGTTGTGAAAAGACGTTACAGATAGGGGGGATTTTGCTTCCTCTTCGTGTTGGGGATAGGGATTACCAATAACAGCGAAAGGTGATCATTTGTTGGCAGGTCTCGTCAAACAATGGTCTctcttaataataaatagacGTGTATGCTGCGTAATCTAGTATCATTTAGACACGTTATAGCAAATTATTCAGCACGGTTTTTCCCATTTCACGTGTAGAAATCAACTATTTTGCTTTGGATAGGTCAATCCAACCATCCTTGccaatacaattacagatcgGCTTTCCCCCCCCTTCAACTGTTGCTATTATGGCCTACAGTTTGGGCTCTCATAGGATCTTGGTATGGAGATGTGTACGCTTGATATTCAGCTTCAGCCTCATCGGCAATGCGGTGCATGCAGAGCACATTGAGAATGTGTACGTTTCAGGGATCTCGAACGCTTGCGGAGATGTTGCCGAACAGATCAGGGCATCGAGTGGAGTTATCACTAGTCCTGGCTGGCCATTCGAGTACCCATCTAGAATCAACTGCAGCTGGAACATCAGAGCAAACCCAGGGGAAATTATAACCATAAgttttcaGGAGTTTGAAATCCAGAGTTCACACAGGTGTGGATCAGACTGGATTTCAATAGGCACCTACAAAAACCTCGATGGCTACCGAGCTTGTGGCTCCTCCATTCCAGCACCTTATATCTCTTCCCAGGACCACGTCTGGATCAAATTTCATTCAGACGACAGCCTGACTGGAAAAGGCTTCAGGCTGTCTTACATAACAGgAAAATCCGAGGAGATCAGTTGTGATTCTGATCAGTTTCACTGcgcaaatggaaaatgtatccCAGAGTCGTGGAAGTGTAACACGATGGACGAGTGTGGCGACAACTCGGACGAAGAGCTGTGTATGCAGCCCAACCCCTCCACTGCCTTCTCATTCCAGCCCTGTGCCTTTAACCAGTTCCCGTGTCTTTCACGCTACACCAGAGTATACACCTGCCTTCCCGAATCTCTCAAGTGCGACGGCAGCATTGACTGCCAAGACCTGGGCGATGAGATCGACTGTGACGTCCTCACGTGTGGGGAGTTGCTTAGAAACTTCTACGGCACCTTCAGCTCCCCCAACTATCCTGACTTCTACCCGCCTGGAAGCAACTGCACCTGGCTTATTGACACAGGTGACCACCGGAAGGTCATTCTGCGCTTCATGGACTTCAAGCTTGACGGTACCGGGTACGGGGACTACGTCAAAGTGTACGATGGACTGGAGGAGAATCCGCGCCGGCTCTTGCGGGTCTTGACTGCCTTTGACTCGAGGGCACCAGTGGCGGTGGTGTCGTCCTCGGGGCAAATCAGAGTTCATTTCTATGCGGACAAGATCAATGCCGCTCGTGGGTTTAATGTGACTTACCAGGTGGATGGCTTCTGCTTGCCATGGGAGATTCCTTGTGGGGGCAACTGGGGCTGCTACACCGAGCAGCAGCGCTGTGATGGCTACTGGCACTGCCCCAATGGGAGGGATGAGGTCAACTGCAGCACGTGCCAGGAGGATGAGTTCCCTTGCTCCAGGAATGGGGCGTGCTACCCACACTCGGACCGGTGTAACTACCAGAACCGCTGTCCGAATGGATCCGATGAGAAGAACTGCTTTTTCTGTCAGCCAGGAAACTTCCACTGCAAGAACAACCGCTGTGTGTTTGAGAGCTGGGTGTGCGACGCGCAGGATGACTGCGGAGACAGCAGCGACGAGGAGAACTGCCCCGTGATCGTTCCTACTCGGGTGATCACCGCTGCGGTCATCGGGAGCCTCATCTGCGGGCTGCTGCTCGTCATTGCCTTGGGCTGCACATGCAAGCTTTACTCCCTGAGGATGTTTGAACGCAGATCATTTGAAACCCAGCTGTCCAGGGTGGAGGCTGAGCTGCTGAGGAGAGAAGCTCCTCCGTCCTACGGCCAGCTAATTGCTCAGGGCTTGATTCCTCCAGTGGAGGATTTCCCCGtctgctcagccaatcagGCCTCCGTTTTGGAAAACCTGAGACTAGCAGTACGTTCACAACTAGGATTTACCTCGATCAGACTGCCAACGTCAGGGCGAAATAGCAACATTTGGAGGCGCCTCTTCAACTTCACCAGGTCACGCCGTTCAGGGTCTCTGGCTCTGGTCTCGGCCGATGCAGAGGAGAGTGCCGGCAACAGCGGCGCGGTTCGGGAGGCTGAACGGACTGGTCCACACCGGGGGCTTCTCCCTCTCGATTCCGACGACACTGACACGGAGAGCGAAAGGCGTGACATCCCAGGGGCGGTGGGTGGTTTGGTTGCCCCCTTGCCCCAAAAGATGCCCCCGGTGTCCGCAGTGGAGGCCATCGTCTCTGTGTCGGTGAGCTCTGGTCAACAGGCAAGCAGGGACGCGACAGAGAGTGCCAGGGAATCCGGGACGGCCGAGCCCCAGTGCGCCAACCCGGGGAGGAGCCAGCTCTCCAGCGCGCTAAGTCGGATGACGCGGAGCCTCCGCTGGGTGCGCTTCTCGCTCGGCAGGTCTAACATGGCgagccagagccagagcccCTTGCGGCATCTAGACACCGCGAGCGGCGGGAGAGAGGAGGACGACGACGTGGAGCTGCTGATTCCTGTCTTGGATGCTGCTTCAGATAGTGACTTGAGTGAGTGTTCCAGGCCTCTGCTCGAACCTACCCCAGAGCACGGGCATGGGCCAGCACAGCCTCACACTGCCACGGGGCATAGAGTCTGGCCCCCCAGTAGAGACGGGCCCTGTGAACATTGCGGGATGGTCCACACAGCTCAGATTCCTGATGCCTGCCTGGAAGCAACGGCGAAAACTGAAACAAGTGACGACGAGGCGTTGCTGCTTTGTTAGGTACTATAGTGAAATATGGGTACGGTATAAATTTGGGCCCTGTTGAAGCTTGCcatctgttttggttttgttaatttatttagtttttttgtctttggaTTTACGCTAAACCTGTTGTAAAACTGCAGCAAAAAAATGCCTGTAGTATATTACTAGTCGGTACAGTGCTCCCCaaatttgtttggtttgtttgtttgttttttgtttcagtcaCATGATTTTTCTTCAAAGATGTTAGGACTCAACCCGGTAGGAAAGCAACACATATATACGGTCTTACCCAAGGAGTTGTGAAATTCGATCTTCTGAAGACTGCACTTCTGATTTATGTTATACATAAGCAATGGTCAGCTAAAATTGTAACGAATAATGAAATGCAACCACAGAACTTGCAGCTTGTCTTCTTTtacttaaatgcatacatatatggagagatatgtgtatatacagagaTGTTGAAAATGGAAGCAGGTgaatttcacacaaaacaaatcacacccATGTTGGAAACCCCTTGGGTCTATGGGTTGTATTTCATATGGTTTTCTGCCTCAAttattgtttcaaaatacacattCTGGTCGTGAAGGGGAATGCACTAACAAACACAGGCTTACCATATAATGGTAGTAAATGTATTGCAGTATTTTTACCCCTTACACCCCATTGGAATGGTACGGAGCTATTTATGCACACGTGTATCGTGGggaatagatttttatttatcattacgGAAATAAAGGCATTGGGATAGAGAACGATGTGTAACATCCactactgtttattttatttattgtttcattactgtttttggtaaaactaaatgttttggTACCgagtgtaattgtgtgtgtatttattaaaaaattaatttTGGTAGACGTTATTTGAGAAGCATGTTAAATTGTCTTGTGCATTTCTGTTAAGTGATATGCTGTAACTGtttactgaacaaaacaaaatcccaaaaaaagaataaaagcataAATTCTACTATTTGTGGTTTTCTATAAGTCAGTGTGTtgcacgtgcacacacacacacccgttTGACATTCATGCATTATTCATAGTCCATAACTCTTGCCAGCATAAC

Function

symbol description
lrp12 Orthologous to human LRP12 (LDL receptor related protein 12).

NR:

description
PREDICTED: low-density lipoprotein receptor-related protein 12-like

GO: NA

KEGG:

id description
K20050 LRP3_10_12; low-density lipoprotein receptor-related protein 3/10/12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002635 True 4655 mRNA 0.49 7 23967578 23985386

Neighbor

gene id symbol gene type direction distance location
AMCG00002631 NA coding upstream 290141 23652972 ~ 23677437 (+)
AMCG00002630 NA coding upstream 559612 23407566 ~ 23407966 (+)
AMCG00002620 NA coding upstream 899778 23056782 ~ 23067800 (+)
AMCG00002624 NA coding upstream 911862 23043824 ~ 23055716 (+)
AMCG00002619 NA coding upstream 933993 23028636 ~ 23033585 (+)
AMCG00002637 dpys coding downstream 11861 23997247 ~ 24007711 (+)
AMCG00002636 dpys,LOC107686378 coding downstream 34118 24019504 ~ 24036531 (+)
AMCG00002642 NA coding downstream 384498 24369884 ~ 24376014 (+)
AMCG00002646 NA coding downstream 520907 24506293 ~ 24517840 (+)
AMCG00002649 NA coding downstream 691920 24677306 ~ 24679989 (+)
G124774 NA non-coding upstream 137594 23829670 ~ 23829984 (+)
G124770 zfpm2 non-coding upstream 285352 23682013 ~ 23682226 (+)
G124750 NA non-coding upstream 360739 23606537 ~ 23606839 (+)
G124740 NA non-coding upstream 531258 23421973 ~ 23436320 (+)
G124687 NA non-coding upstream 690803 23218330 ~ 23276775 (+)
G124783 NA non-coding downstream 2316 23987702 ~ 24004361 (+)
G124823 NA non-coding downstream 276162 24261548 ~ 24261841 (+)
G124831 NA non-coding downstream 293048 24278434 ~ 24278640 (+)
G124856 NA non-coding downstream 402523 24387909 ~ 24392351 (+)
G124860 NA non-coding downstream 419090 24404476 ~ 24406978 (+)
G124769 NA other upstream 286193 23677935 ~ 23681385 (+)
G124689 NA other upstream 677043 23152648 ~ 23290535 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other upstream 787535 23068124 ~ 23180043 (+)
AMCG00002622 NA other upstream 977414 22987545 ~ 22990164 (+)
AMCG00002573 NA other upstream 3634548 20241848 ~ 20333030 (+)
G124863 NA other downstream 436866 24422252 ~ 24422613 (+)
AMCG00002650 NA other downstream 776498 24761884 ~ 24776815 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other downstream 1389556 25374942 ~ 25384312 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 2289928 26275314 ~ 26279137 (+)
G125219 NA other downstream 2376826 26362212 ~ 26369525 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_00935826_00945755 LRP12 coding CI01000320 null 934432 ~ 945755 (-)