AMCG00002650


Basic Information

Item Value
gene id AMCG00002650
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24761884 ~ 24776815 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002650
TGCGGATCGCCATATAGCGTGTGTGTTCTGAATGACAGAAGGGGCATGTCTGTATTTCTTCTAAAACTTTAGCTGGGAATTCACTACAGTATGCTACAGCCAGCTCAAAATCTCTGGGATTAACTATATTGAGTCACCATTTCAGTCAAGTGACTGAAATCAGTGGGCTTTGGAGATGCAGCAGTTTCTGTTCAGGGGGGCGCTTCAGCACATAGGTGCTACACGCTCAGTGCTCCTGAGACCAGCACTACAGCAGGTGAATAGAGCTCCAGCTGTAGTCCCATGCACAAGGTGGTCGTTTCTACCCCCGCGATGGGTGAGCATGTCATCAGCTGGGAGAGCTGCTGAGCAGAGGAAGCCTAATATGGAGGAAGACCCAAGGCCACCCCCCCCAGAAAGGCCCCTGGGGACAGCAGTCAGCGATCCGGGTCACAGCACAACCCAGATCGAGACCCCAGCCAAAGCTCCAGTCCAGGAGGACTTTCTAGAGATTGACCCTCTCCAGGACAAGTCTAGCGGCCTCTTCATGAGATTCAAGAAGACCTTTAAGCAGTATGGGAAAGTGATGATTCCAGTGCACCTCATAACATCCACCATGTGGTTCGGCTCATTTTACTATGCTGCCATGAAGGGTGTCAACGTAGTTCCTTTCCTGGAGTTTATTGGATTTCCTGAGACCCTAGTGAACATGCTGAAAAACTCTCAGAGCGGCTACGCACTCACTGCTTACGCCATGTACAAGATCGCCACACCAGCCAGATACACTGTGACTTTGGGGGGAACATCCGTCTCAGTGAAATACCTCCGCAAACATGGCTATATGTCCACACCACCCCCAGTCAGGGACTATATACAGGACAAAATGGATGAAACAAGGGAACGGTTTTCCGAGAAAATGGAGGAAACGAAAGAAAGGTTCTCCGAGAGGAtggaagaaacaaaagacagaatTACTGAAACCAAGGACAAGCTGTCAGGAAAACTGCAAGAGACCAAAGACAAAGTGGCTTTCCgcagaaaaaaagaatagaTCCGTGTCACCCTGTGTTGCGAAACTCGTGTCTCAGAGGAGTTGCAAAATGGTTCTCCAAAGCATACACATGAACCATCAAGTCATCAGATCAGTTAAAGTCACCCTCAGAAGTCGAAGTCTGCTCAGGTTGCGGTCTTCTGCGCAGAGAAAACCCGGCAAAAGAGCGTGGAAGAAACTCTGGGACAGTCTGCTTGGTGGAGTGCTGTTGGATGGAGTCTAATGGGTggaaatcatttcatttttgtttccagATGTATACGAAGTTCAAGAAACAGAAGTTAAAGAAATTGTAGGTCTGGTGCGAATCAAATCAAATCGTACATTTCCTTGGTTTTCCCAACCCCTGTAAGTGTGACAATTACTTTCCCTATTACTTTAAGACCTGTATTCAAAATATTCCTAAAGATAATCGATACGATGAAGCATGGAAGCTGCACACAATTTATATTGTAAAGGTAATTGATGTGCAATGATATGCCCTATTGTTGGCAATAATGTCCCTGTTTGAAAGAAGAAGTTATCACATCTCCAAATTAACAGGCTATGATAAATCGCTTCATGTGCAGCTAAATAGATTTTGATAGTAATACTATACATTGTTGCCTATATAACATTGATGTTAGTGTTTCAGGTCACTTTGGATGAAGGCATCTACTAAATTACATAATATtcatcatcaccaccaccaccaccaccacagatGGATAAATAAGTTTTGATCGGTAGTTATGGTCTCCTGCTTAGTAAAACAAGACCAAAAGTACTGAATAAACTAATATTGAAATTTGCAAAACATAAGTTTTAAACCTAAATCAGATTCTTACATCCCTCGTTTATCTGAGGGCAACATGGTtagccaaaaaaaaacagaagaccaaCTTCATGGAGAGGGGAAACCATAATTTGTTTAACACAAGGTGCTGGAATCTGGTCAAATATCCAGTTAAAGCCAAGCCATTTAAACTCATGTAAGAATTTCTCCACTGTCACTAGAGATTTCATTCTCcagtatagcctatatattttgcGCTCAGTGTGAGATTCAGCACTGGACAGATGTCTGAAAACTGGTCCCCCCTGATCAATGAGTCCACTTTGATTTAATGCAGCAGTCCTTCTCTGAGCTAGACCACTATTTATTCCtttggcagatgcctttatccaagatGAGCGACAAGGTTTTGCAAGAGGTGGAAACTATTTAAATGAGAAAGCATTATTTTGGAAATGAGAATCCTGCTCTAGATGCATGAACCAGAGACCATTGGCAGCATCAAGTCAGAAATATTCATCAATAGATGAGACCGGAAGTTACACAGCTTCCTGCTCATATTTGGACATTTAAACTACAGTATCATTAGCAGGGGACTGTGGGAGTTTCAATCCTGCATGTTTTAAAActcttcaatttcagaaacCACTACATATCATGAAGGTGGtggcatttgttttcagaataatCAAAATGCCTTCAGTCAAGTAACTCCATGATAAAGAGGATCTCAAATCGGAAGATGCAGGTTTTTACTTGCTCTTATTCTATAATCAGATAACGTTCTGAACTTAAACTTAACATTTTACAGCCTAAAATGCTCAGAGAAATGATTTTAACCAGGTGCCAAACTGTTGGcaattttcagaaaagcattagCAGTAGTGCCATCTAAGATCATAAATCGAACAAAAGTgcttatatttaattgattatacAAGGCCATCTAATGTTGTCCATTGACCACTAATGTGGCATTCACTTTTAGACTGCTCAATTCCACATAGCCAGATAGCTTGAACAAAATTAACTACAGATTGTTTGAAAGTGAACTCTCGTACGCACCTCAAGAGTTTCAGAGATGAGGCATTGCGTTTGTGAATTATTATAGAATGTTTCCATCCAACAGACTCTAtacagacattttcaaatgaaaaatgtgtatcAGCATTGAGTGTGTCCTCGTGCTTCTCAAATCTGAGCTGAGGATTTAGGCTGGATCCAAgtatcccttttttttttttttgtgtgt
>TU156570
GCATAAAATTTTTATTTATGACTACAACAGCACTTagagcaacattttttttgttttttctttttctttcttttctgtaaaaGTATTGCAATAACAGACCTTAGGCCTAAAACCTATGACATCACaattgcttaaataaaaaaaggcaaaaatacaCAACAGTTGTAATttgtaggggtgtgtgtgtatgtatatacatcttGTATAaccacatatatacatacacacacatatatataactgggattgaaaataaagcaaacaaatgaagGAAGTCCTGCAATAACTCACATGAATAATTATCAAGACCAAAGATACATAACTgttgtgacatttttaaaaaccgAACGTTAAAACAGCTACTGTCGATAGTTGTGTACATACTCCTGATCACTGGACAGGAACGCACTGAAGAATTCAGCAGAAGCCCAAGTTAGTTCTTTAAGCTAGTgcggaggaaaaaaaacaaaacaaaaaaacaaaacaaaaatctacagCCTGTGGCTTTAACAAGGATTACAACAGATCTCTCAAAACTACACAATTGCCACTTGTTTGGTGCTTTAAAAATGGCATTGCTATGTAGATTACCTTGAGATAACAATGAACATGCTCAACTGTTATTGTACAGTAGATTcttagtatataaataaatgagactGCAATTAAAGTGTGTTCTATATACCACATACACTGATTATAAAATGtagatagagagaaagaaaatatgaaaacttcTAAAACTGCATTCTCCTCCTTTAACTTTCCTGGTAGATTAATACATTTCCTACTGTAGTTCAGAGCATCACAGACATgttggaatatataaaaataaaacaaattcagtcAAGAGGTAAAACGGCTCAGATGTACTTCTCACTGAAAGAAAATTActgcttttcttgtttatttaatgaaaacaatgaatgaTGTCAAAGATCCCTTTCTGAACAGGGCACAGCCGATTTGATTGTATTCAATCCACttactaatacatttaaatccattTCGTTCCAAAAGAGTGCAAAATTATGTTTCCAAATTTAGTACATTTTCATAAGTTACCGAAGCTTGAATTTCTTTAATTGTTAGTTGATATTAAGACATTCtattatacaaatgtaacaaacaaaaaaagcacacaaaacacacacctgtagtGTAAAGTATGcacatccttcatttgaaataatgttcggtggttaatttaaatataattgatttaataagTATAGTTTCATTAAGTCTATTACCTTTTCAAAGTTGTCAAACCAATTTATAATGGAAAAAACTGAACCAAGTTCAGAAACTAGGTGTACGGTATGAAGTTTAACTCGGTTCagtcatatatacatttacagttttctccAGACTGAATCGGTACTTAAGCAACATTCATTAAACTAATCCCAGAATAGAACCGTTTCAAATGAAGTGTGTAAATACTTTTGCCCACAACTGTATACTCAGTTATtcaaatggaattaaaatatgaagtaCTTATTTACACTAAATGAAACTGTGCAAGCAGAAACATTGTGTGAGAAAAGTAGTTGAAGCTGCACTTTATGAAAATGTTAGGTTTGTATGTTCATCCTCAATCCTAGAAACAGTGGGAGTTGTTTTTGCCCCTTAAACTTTTTTGCCCACTGTTGAGTGCTAAGTGTGTAGCTtttcacagagaaagaaaaataaccatTTATCTTTCAATGAAGTCACATTCGAAGAGAATTAAGACAAGAAATGGCAATTAAAAAGTGTAATACAATACGGTCACACTTAAGTAAAGAAGCTAAACACTCATTGTTTAACATGTTTGCAGTTAATGGAAGTTTGTTGTAAATATTGTTATacacaatgtttttgtattgcaaaCACTGTTAAaagctacatttttatttgttttcatagctTGTTTCATAACTTTGACCACAAAATCGTTCAATAGCTAGCAAAGATACAGTCTGTTTCAGCAGAGAAGTACATCATAAGAGGCCTTTCACATAATTGGAAAAGAACATCAGGGAGTTTCGAAAGCGGGCCATTTCTTACCAGTTTGTTAAAAAGCTTTGCGTTATAGAATTCCTAGTTTCAttttgggaaacaaaacaaagaggaaACATTCGAAAACTACTTTTTGACACTGCTCTggtcaaatgtgtttattaaactaaTACTGGTCCAACCAAATAACAGTGTCACACAAATGGCAAGCGCTCTGGTGCAGGGTattctgtactttttaaaaagataccAAACAACTAATTATCTTGTTCAACAACTGCctaaattcaaaacattttttcttcctcaCCATAACATAGATTATTTATAGGAAAATAATATAAGTagtatctcttttttttttttttttttttatcatttttatgcaTTACTTTGCAAACTTTTTCCGGTTTACAAAAAGACAAAGCACATTGTAGGCATTCACAAATTTGATGCCGTTGTGTTAAAATTTTTATATCTATACATTATCTTACATTATTAACAAtgtctttttctgttgtttctaCCCATTGGGTAGGATATgtgcataatatatattcaaGTTATATACAGCACcttacaaataaacataaagagACAGACAACTGAAAAAAGCACCATTGGAAAGTGAGGCACAACGAAGGTGGGAGCTTTTGAGTGCAAGTGGGTTCCTATATCTGCTCAAACCTGAACATTAGGCACCTTATTTGCTCACATAATAGTAACATGCAAACCTCctcatagaaaacaaaacaaaacttttctttttcatcctTTTTAACTACAACAGCagacaaaacaagcaaaacaagaaaaagcacaaacaaaacagccGCTTCTCACACCAAAAAAGGTCCTATCACGTACTGAGTTCTATAGGAAGCTGACATACAAAACAATTGACaacagcagtagcagcagcaatAGCAGCAGTAGCGATAGCAGCAGCAATatagaaacaacaaacaaactctGGTCTCTAGCTCAGAACTGCAGAGTTCATAACATATGACAGGGTATACATCAGTATAAAAGCAACTGAAGGTTTTCTTCTTAGTATAATCTGAAATCCAAGTAGTTCTAAAAAATGTGGAGGGGGGGATAAGCATTTCTTCATTGTTCCTAAAACACTGAAGTAATAAAAGGGTTTAGGCaggggattttattttcctgttttgtcCCAGCTTGAACACAAAATGTGACTGCCCTTTTCagaatttgctaaaataccaaattaaaaaaatcagatccttttcaaaacacagataccctgatcattttttttttttttttttatcctttcaGGTCTCAGAGGAGTTGCAAAATGGTTCTCCAAAGCATACACATGAACCATCAAGTCATCAGATCAGTTAAAGTCACCCTCAGAAGTCGAAGTCTGCTCAGGTTGCGGTCTTCTGCGCAGAGAAAACCCGGCAAAAGAGCGTGGAAGAAACTCTGGGACAGTCTGCTTGGTGGAGTGCTGTTGGATGGAGTCTAATGGGTggaaatcatttcatttttgtttccagATGTATACGAAGTTCAAGAAACAGAAGTTAAAGAAATTGTAGGTCTGGTGCGAATCAAATCAAATCGTACATTTCCTTGGTTTTCCCAACCCCTGTAAGTGTGACAATTACTTTCCCTATTACTTTAAGACCTGTATTCAAAATATTCCTAAAGATAATCGATACGATGAAGCATGGAAGCTGCACACAATTTATATTGTAAAGGTAATTGATGTGCAATGATATGCCCTATTGTTGGCAATAATGTCCCTGTTTGAAAGAAGAAGTTATCACATCTCCAAATTAACAGGCTATGATAAATCGCTTCATGTGCAGCTAAATAGATTTTGATAGTAATACTATACATTGTTGCCTATATAACATTGATGTTAGTGTTTCAGGTCACTTTGGATGAAGGCATCTACTAAATTACATAATATtcatcatcaccaccaccaccaccaccacagatGGATAAATAAGTTTTGATCGGTAGTTATGGTCTCCTGCTTAGTAAAACAAGACCAAAAGTACTGAATAAACTAATATTGAAATTTGCAAAACATAAGTTTTAAACCTAAATCAGATTCTTACATCCCTCGTTTATCTGAGGGCAACATGGTtagccaaaaaaaaacagaagaccaaCTTCATGGAGAGGGGAAACCATAATTTGTTTAACACAAGGTGCTGGAATCTGGTCAAATATCCAGTTAAAGCCAAGCCATTTAAACTCATGTAAGAATTTCTCCACTGTCACTAGAGATTTCATTCTCcagtatagcctatatattttgcGCTCAGTGTGAGATTCAGCACTGGACAGATGTCTGAAAACTGGTCCCCCCTGATCAATGAGTCCACTTTGATTTAATGCAGCAGTCCTTCTCTGAGCTAGACCACTATTTATTCCtttggcagatgcctttatccaagatGAGCGACAAGGTTTTGCAAGAGGTGGAAACTATTTAAATGAGAAAGCATTATTTTGGAAATGAGAATCCTGCTCTAGATGCATGAACCAGAGACCATTGGCAGCATCAAGTCAGAAATATTCATCAATAGATGAGACCGGAAGTTACACAGCTTCCTGCTCATATTTGGACATTTAAACTACAGTATCATTAGCAGGGGACTGTGGGAGTTTCAATCCTGCATGTTTTAAAActcttcaatttcagaaacCACTACATATCATGAAGGTGGtggcatttgttttcagaataatCAAAATGCCTTCAGTCAAGTAACTCCATGATAAAGAGGATCTCAAATCGGAAGATGCAGGTTTTTACTTGCTCTTATTCTATAATCAGATAACGTTCTGAACTTAAACTTAACATTTTACAGCCTAAAATGCTCAGAGAAATGATTTTAACCAGGTGCCAAACTGTTGGcaattttcagaaaagcattagCAGTAGTGCCATCTAAGATCATAAATCGAACAAAAGTgcttatatttaattgattatacAAGGCCATCTAATGTTGTCCATTGACCACTAATGTGGCATTCACTTTTAGACTGCTCAATTCCACATAGCCAGATAGCTTGAACAAAATTAACTACAGATTGTTTGAAAGTGAACTCTCGTACGCACCTCAAGAGTTTCAGAGATGAGGCATTGCGTTTGTGAATTATTATAGAATGTTTCCATCCAACAGACTCTAtacagacattttcaaatgaaaaatgtgtatcAGCATTGAGTGTGTCCTCGTGCTTCTCAAATCTGAGCTGAGGATTTAGGCTGGATCCAAgtatcccttttttttttttttgtgtgtttgcgaAAAAAAGGGGCAACCCCTATTGCTCCCACTGAAAAATACCTTTGGAGCGGTTATACGTTCCACAGATGAAAGAACACACACAGTAATCACATATAGCAGttccctcttcttcttctttttttaacaataagATAGTGCAACTTCAGaggactttttattttgaatgttaagTCCAATCCTCACAATTATTTCCACATATATCTTGGCACTCAGATTTGTATCAATTGTTTTCAAATCTTGATTGTGTACAGGTCTCGGTCTTTAAAATTCTCCTAAActgccctcccctctctcccaggGCCAATACAGTCCTTTTATGCTCAGGtaggaggggggtggggtggagtaAGAATCTGTGCTAATTatcatttttgtgttatttgaagGGAAAAGTTtatgggggggggtggggagaaaaacacaaaacagaacaataaaacagctatgaagcagaaaacaaaaatccacacAGTGCACGCACCCCCCGTAATCCACCAAAGAAAGAATAAAGCAACATGATCGTTTGTAAGCTTGgttcctttcttttttgaaaCATTGTCGTTCTCGTTTTTGTACTGAAAGGCTGATATTAAATTGTGCGCGGGAGTGTCGAGTGAAGAGGCCACACTCCcctgagggaggagagaaggactGATGCCCACCACCCCCCCCTGCCAGTTTCACACCAGGTTCTCCCCCTGGCTTTCCTTGTTGGCCTTGACGGGAACGATTGTTGTGCTCTCGGGATTGCTCTGCTGGACTGTTCTGCTTCCTGCCCTCTGCGTCGGAGGAGGGCTATTGCTGTGCTGGTGAAGAAAGAACGAGTAGCCTGGGTAGTGGCCCATGACTTCACTGTAGGTGGGCGGGGGGCCCTCCATGCGGCCGTGGCTGCTGGAGTTAGTGGCACTGATGCCCGAGTTGCTGCTGGGCGGCCGGGGCCCCCCGCTGTGCACGCCCACGTTGATCAAGTCACTGTCGAAGATGGTTCGGTTGGGGGGCGCCCGGACCGACTCCCTGTTCAACTCCATCTGCTGCTCGGGGTCCCTCAGCTGGAGCGTGCAGGGGCCCTGGTAGGGCGGCGGCTCCTCCCCATCCGACAGCGAGATGGTTGGCGGCAGGTCGATCTCGTGCTGCAGGTAAGGGTAGGTGGGCTGGAAGCGGCTGAATCGATCCCTTTGCATAAACGCCGGGGCTGGGAATCTCTCTCTGGACCGCGGGGCGTACATGATCT

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002650 False 3057 mRNA 0.42 7 24761884 24775578
TU156570 True 6543 lncRNA 0.38 2 24769518 24776815

Neighbor

gene id symbol gene type direction distance location
AMCG00002649 NA coding upstream 81895 24677306 ~ 24679989 (+)
AMCG00002646 NA coding upstream 244044 24506293 ~ 24517840 (+)
AMCG00002642 NA coding upstream 385870 24369884 ~ 24376014 (+)
AMCG00002636 dpys,LOC107686378 coding upstream 725353 24019504 ~ 24036531 (+)
AMCG00002637 dpys coding upstream 754173 23997247 ~ 24007711 (+)
AMCG00002657 NA coding downstream 162051 24938866 ~ 24949499 (+)
AMCG00002656 LOC107596739 coding downstream 190172 24966987 ~ 24978576 (+)
AMCG00002659 NA coding downstream 352801 25129616 ~ 25134264 (+)
AMCG00002658 ncalda,ncald,LOC100692199,LOC105901278,LOC103042493,LOC106931336,LOC108268956 coding downstream 503177 25279992 ~ 25298168 (+)
AMCG00002662 ywhabl,LOC105896388,LOC102785026,LOC100692314,LOC107570839,LOC103145058,LOC105016475 coding downstream 637016 25413831 ~ 25433868 (+)
G124910 NA non-coding upstream 154350 24607296 ~ 24607534 (+)
G124908 NA non-coding upstream 180188 24579342 ~ 24581696 (+)
G124862 NA non-coding upstream 350543 24411014 ~ 24411341 (+)
G124860 NA non-coding upstream 354906 24404476 ~ 24406978 (+)
G124856 NA non-coding upstream 369533 24387909 ~ 24392351 (+)
G124965 NA non-coding downstream 168423 24945238 ~ 24963480 (+)
G124999 NA non-coding downstream 362165 25138980 ~ 25139272 (+)
G125005 NA non-coding downstream 522886 25299701 ~ 25303155 (+)
G125011 NA non-coding downstream 551365 25328180 ~ 25328861 (+)
G125022 NA non-coding downstream 679841 25456656 ~ 25456887 (+)
G124863 NA other upstream 339271 24422252 ~ 24422613 (+)
G124769 NA other upstream 1080499 23677935 ~ 23681385 (+)
G124689 NA other upstream 1471349 23152648 ~ 23290535 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other upstream 1581841 23068124 ~ 23180043 (+)
AMCG00002622 NA other upstream 1771720 22987545 ~ 22990164 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other downstream 598127 25374942 ~ 25384312 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 1498499 26275314 ~ 26279137 (+)
G125219 NA other downstream 1585397 26362212 ~ 26369525 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G70693 NA non-coding NC_053118.1 CM020915.1 4894939 ~ 4897498 (-)
striped catfish (Pangasianodon hypophthalmus) G10348 LOC108267967 non-coding NC_047595.1 CM018541.1 19105081 ~ 19110849 (+)