AMCG00002646


Basic Information

Item Value
gene id AMCG00002646
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24506293 ~ 24517840 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002646
ATGATGCTTTGGCAAGTTTATTCCAACAGGCTTTCTGGATTGGTATCAGACAAGTACATTAGTTTAGATGTCATTGGTGAAACACTGAATTGCTTAGCAGATAAAGAATCTTTTTCAGTGGAACGGAAAATCCCATCATTTATGGAGAAGGGGAAACCAAATCTTATAATGTGTAAAGATGCTGAAATGTTACCACTGATGCTTTCTGTATATGAAGATGAAGCCCAGCCTCTGCCCACATATGATGAAGTTTTAACTTGCACATCAGAAACAAGTGCAGAGGAAGTTGAGCTAATCATAAGAAGAGCTCTAAAATCTGGTCAAAAAAGCTCAAAGATCTACTGCTTGCTTGCTGCAgataaactaaataataaagttGCTAGGAAAatggaatatgtatttttccaaattTCCCAGAATCAAACCGTGCATGAATACAGCTTCCTCATATTATGTGATTCTGCAGCACAAAACAGCTATATCACCACAGCTTTTGACTCTTTTAAGAATTCTGCATTGCCTACACTAAGTACTGATCATCTTCAGAAGTATCTCCAGCTGAAGCTTGGAATTGGAACTAAGGACGTGTTGGTAAAATCAGTATTAGGGTCATTCCAACAGAATGCCAAGATAGTTTTCTCTGAACGAGCCAGCATGGGGAAGTCCCTCTATGTGAGAAATATTACCCAACGGTGCAGGGAGGAGTTTAAAGCTGAAGGGTTTACAGATAAAACCATCCGCCTAACAgaattagaaataaaacctggaTTCATTGTACAGCAGTTGCTGAAGTATGAAGATAAACCAACAGATAATACCCCAAGAGTCTTCCACTTTGATGTATCAGCTGTGgtaactAAAGGACTATATAACTTTCTGGTTCAGCTGCTTATCTTAAGATGTTTCCAAAGCCCTGAAGGATTAATTTGGAGGTGTAAAGATTCTCACCTTTACATTGTGGAGTATCTACAAAGAAAACATGTCAAATGTTATGGAAAAAACCTTGAgatGACAACGGATGTAGAGAACAGTTTCCTCTCAATTTTTCCTGTTGTGCAGTGTCTTTCAccaaatgctgttttaaaacacCTAACTGAAACAGAGAAACCACACACTTCTAAAAGAGAAATCCAGCTAATGGATAAGATGGAGTTCAATAGTGATGCCTATCAAAGGACTTACCAGTATCTAACAagatacaaaaaacaagatGATCTTCAAAAATTCACGTTTAAACCAGGGCATCGTGAGGGTACCGAAAAGGAATGCTTAGAATGGTTGTTGGAATTCTGTGGGACAACCAATCCTTCCTGGAGGGAACTCCATAACTTCACACACTTCCTGAATCTGCAGttgacaaaatgtgaaaaatccaTCTTCTGCTGTGAAGCTGTGAAGGATGAcctaacacatttcaaaaacttTGTTGTAAAGTTTATGATTGGAATGTCTAAGGACTTTGCTCTaccatctatatctatatcagATGAAAGCAATTTATCTTCTGTATCTGGAGACAATCAAGAGGATGATCTGATAAAATTCCAACTGAAGAGACAATGGGAACAACAAGCCCACCCCTACATCATATTCAATGCAGATGCAATGTCAATGACATTTTTAGGATTCCACATCAATTCAGCACAGGATGCTGTGGATGTTTACACAGGTAGAACAATAGAAAAGAACATAATGACCAGGCAGTTGTATGAGCAACTAAGGCAACAACATGTGCCATTTAATATCAGATTTGAGAGCTTGTCCCGCAAAGAGCAATTGGATATTTTGTGTAGGGTTTTGGGAGTAAACGCAGCTAAGGATCCAGATGCATCTTACCAACTGACACTAGACAACgtgttgaaaatgtttgcaaTTCATTTGCGTTTTCAGTGTGGCATTCCTGTGATAATCATGGGTGAGACTGGATGTGGCAAAACCAGATTAGTTCAGTTTATGTGTGAGTTACAGAGCTCAGGAAAGGAAGCTCAGAATATGACTGTCATCAGAGTTCATGGAGGTACCACATCAAATGACATATACAGTAAGGTTAAGGAAGCAATGGAAATGACAAAGgagaatgaaaagcaaaacatggaCACAGTTCTTTTCTTGGATGAGGCAAATACAACTGAAGCTGTATTTGCAATTAAAGAAGTCCTGTGTGATAAGACAGTGAATGGAGAACCAATCGACACCCCTCGGTTAAAAATTATTGCTGCCTGCAATCCatataagaaacacacacagaaggcAATTGAACAGCTAGAGAAGGCTGGCCTGGGATATCGAGTTCATTCTGAAGACACCATTGAAAAATTAGGGCACATACCCATGAGACAATTGATTTACAGAGTTCAGCCTTTACCACCAAGCATGCTGCCCCTTGTGTGGGACTTTGGTCAGTTAAATCAGGACACACAGAAGCTCTACATTACTCAGATGGTTAAGTCATTTCTTGAAGTAGCAGATCTACCTAAAACACATGCTGAAGTGTTTACCAGGGTCCTTTCAGAGTCTCAGCATCACCTTGCTGAGAAGAAGGATGAATGCAGAATGGTCAGTCTAAGAGACATCGAGAGATGTATGAAAACAATGTTGTGGTTTTATGACCAACGAGAAATATTGTTTGATCTGATTgataagaaaaaggaaatgaaaaagaatacTGAATTAAAGATGGATGATGCCACCCGGTCACTTATACTAGCCACAGGAGTTTGTTATTATTCATCCCTTGAACATCGTAGAGAATATTTAGACATCATTGGAAAATCTCTTTGCATTAAATGGGATTTAGTGTATGAGGAAATAGATGCATGCCAGGAGGTTTTCTTGGATAATGTCTTTATTCCTGAATCAACAGCGAAAAATGATGCTCTGAAGGAGAATGTGTTTATGATGGTTGTCTGCATGAACCTAAGAGTTCCTTTGTTCCTTGTTGGAAAACCAGGAAGTTCCAAATCCCTTTCAAAGACAATAGCTGCGGATGCCATGCAGGGAAAATCTTCTAAATCTGAGCTTTTTAGAAGGTACAAGCAAGCACAGCTTGTCTCCTTTCAGTGCAGTCCACATTCTACACCAGAAGGAATAATTTCCACATTCCGACATTGTGCCCAGTTCCAAAAAGACCAAGATCTGAACATGtatgtttcagttgttgttcTTGATGAAATTGGATTAGCAGAAGATTCCTCAAAAATGCCCTTAAAGGCTTTGCACCCACTCCTCGAAGACGGGTGTGTTGGTGATGAAAAGCCAGAACCTTACAAAAAAGTTGGATTCATTGGAATTTCAAactggtcactggacccagctaAAATGAACCGTGGCATTCTTGTGTTTAGAACTTCTCCTAAAGAAAAGGAACTGATAAAAACAGCAAAGGACATTTGTTCCACTGCTACTCCATATAATACAGAAATTGAACCATTGATTCCAGACCTTGCAAGGTTTTACATGAAGGTACTAGAAGAGCAAAAGAGTGAATTTTTTGGACTCCGTGACTACTACAGCCTTGTGAAAATGATACTTTGTTATGTTCAGGAGAAGAAAAGCAAGCCATCAAATAGAGACATAGCACGGGCTGTTCAAAGAAATTTTGGAGGTCTAGAGTCAATAAACATTCTcaacattttttcaaaatgtctctATCTTGATTCACTGGATGAACTAATAGTCAGTTCAGTTGATTTGCTGAAAGAAAACCTTGACATGACTAAATCTGGGTTCACAGCAAGATATCTCTTGCTTCCCACAACAAATCATGCAGCTCTATCTATCATGCAGATGCTGAATGTAATAGACATTGACAAAGCTGAAATCATATTTGGATCTGCATTTCCCAAAGACCAAGAATATTCACAGGTCTGTCGTGATATAAACAGGATTAAGATTTGTATGGAAACAGGGAAGTCAGTGATTCTTCTAAACATTGCAAACATCTATGAAAGCCTGTATGATGCCTTGAACCAGTGTTATGTGAAGCTTGGAGGGAATTACTACGTGGATTTGGGACTTGGATCACATCGGGTGAAATGCAGAGTGAAGGAAAACTTCAGGCTTATTgtcattgaagaaaaacaagttgtACATAAGCAGTTCCCTACACCACTGTTGAACAGACTGGAAAAACATTGTctggaaataaaatctgttcttTCTGAAACCTCAAAGTCTCTCTGCAACAAATTGCTAAAATGGGTGGAGTCATTCatcagcaaagaaaaaaacatgaatacaacaGAAAGGGACACTTTCATTGGGTACACTGAGGATACATGTGCATCAATTATCCAAGAGAGTGTTAAGAAAAGTATGTGTTTAGAAAACAACTTGTGTTCTGAAGATGAAGAGCAAATTCTTGAAGAAGCTAAAGGCAAATTAATACAGGGAGCAACTCCAGAATCAATATTGCGGCtacaaaaatctgaatttgaagATTCTGAAATAGTTAATGAACTGTATTTTGTTGCACAGTCTCACATCAGTCTACTTGATGCACTCAAGAAGAATAGGAAAGGATGTGAAGGAGTTTGTCTAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002646 True 4542 mRNA 0.39 4 24506293 24517840

Neighbor

gene id symbol gene type direction distance location
AMCG00002642 NA coding upstream 130279 24369884 ~ 24376014 (+)
AMCG00002636 dpys,LOC107686378 coding upstream 469762 24019504 ~ 24036531 (+)
AMCG00002637 dpys coding upstream 498582 23997247 ~ 24007711 (+)
AMCG00002635 lrp12,LOC107754924,LOC107714470,LOC107689529 coding upstream 520907 23967578 ~ 23985386 (+)
AMCG00002631 NA coding upstream 828856 23652972 ~ 23677437 (+)
AMCG00002649 NA coding downstream 159466 24677306 ~ 24679989 (+)
AMCG00002657 NA coding downstream 421026 24938866 ~ 24949499 (+)
AMCG00002656 LOC107596739 coding downstream 449147 24966987 ~ 24978576 (+)
AMCG00002659 NA coding downstream 611776 25129616 ~ 25134264 (+)
AMCG00002658 ncalda,ncald,LOC100692199,LOC105901278,LOC103042493,LOC106931336,LOC108268956 coding downstream 762152 25279992 ~ 25298168 (+)
G124862 NA non-coding upstream 94952 24411014 ~ 24411341 (+)
G124860 NA non-coding upstream 99315 24404476 ~ 24406978 (+)
G124856 NA non-coding upstream 113942 24387909 ~ 24392351 (+)
G124831 NA non-coding upstream 227653 24278434 ~ 24278640 (+)
G124823 NA non-coding upstream 244452 24261548 ~ 24261841 (+)
G124908 NA non-coding downstream 61502 24579342 ~ 24581696 (+)
G124910 NA non-coding downstream 89456 24607296 ~ 24607534 (+)
G124965 NA non-coding downstream 427398 24945238 ~ 24963480 (+)
G124999 NA non-coding downstream 621140 25138980 ~ 25139272 (+)
G125005 NA non-coding downstream 781861 25299701 ~ 25303155 (+)
G124863 NA other upstream 83680 24422252 ~ 24422613 (+)
G124769 NA other upstream 824908 23677935 ~ 23681385 (+)
G124689 NA other upstream 1215758 23152648 ~ 23290535 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other upstream 1326250 23068124 ~ 23180043 (+)
AMCG00002622 NA other upstream 1516129 22987545 ~ 22990164 (+)
AMCG00002650 NA other downstream 244044 24761884 ~ 24776815 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other downstream 857102 25374942 ~ 25384312 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 1757474 26275314 ~ 26279137 (+)
G125219 NA other downstream 1844372 26362212 ~ 26369525 (+)

Expression


Co-expression Network