AMCG00002656 (LOC107596739)


Basic Information

Item Value
gene id AMCG00002656
gene name LOC107596739
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 24966987 ~ 24978576 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002656
ATGTCCCTTCCCCCTGAGAAGGCTTCTGAATTGAAGCAGATTATTCACAATCACCTGACAAAGGAGCACTTCATACGGGCTTTACAACGCAGGGGGATCGTTGACGATGTCATGAGAGAACTAAGCTTTGTGCAGGAGCTGCCCAACAGAGAACATGCATCGACTCCAAAACCCTCGACTCATTTCGTTGACAAGGAGCCGACTGAAATGAAGAAAACAAATATTGACCCCACAAGGCGGTACCTTTACTTGCAAGTTTTGTGTGGGAAAGCTTTCCTGGAGCATCTGCAAGAACCCGAGCCCCTGCCTGGCCAAGTGTGCTCCACCTTCACCCTGTACCTGCACTTCAGGAACCAGCGTTTCCGGTCCAAACCTGTTCCCTGTGCCTGTGATCCCGACTTGCGAGAGGGCTTCCTTCTGGAGGTCCATAGAGACAGCCTAGGTGACGGCAGTAAGATGGCAGATGCCACCACAATGTTGTCCATAAGTGATCGGGTTCACATGGTTCTGATCAAGACAGACACATCCAGTGAAACAGTCCTGGTTTCTTCCCATTTCCTGGACTGGCGATCagtcctgagctcccccagcgGGAAAACTAGTTTAGCTGCGGAGCTCCTAGGCGTGGGTAGTGAGTCCAAGGTTCCTGTTGGTGTGCTGAACATTCAGCTCCAGCTCTATCCTCAgcttactgagacactgaccCAGGACATTATCAACACTCAGCAAGCACTGGAGCGACAGAAAACTGCAGAGAAAGAGCGCTTGTTCCTTGTCTATGCCAAGCAGTGGTGGAGAGAGTTTCTCCAGATCCGGCCTTCACACAACACAAAGCTGGTCAAGATCTTTGCACAGGATGAGAATGGGGTGAACCGGCCTGTGTGCTCCTACGTCCGAGCACTGCGAGCTGGGCGTCTCCTGGACTCCCCGCGGCAGGCAGCACGTTTTGTCAGCCTGCTGGCCCAAGAGAGGGCCCCTGTCATCGGAGGAGGGCCCAGGCAGGAGCAGTGGTGCACTCTGTTGGCTTTCCTCTGCCGGAACAAGGGGGACTGTGAAGATCATGCCAATCTCTTGTGTGGTCTGCTTCTGGGCTTTGGCCTGGAtgcctatgtgtgtgtgggtaccAAGGCCAAAGGGGTGCCCCACACCTGGGTCATGACCACTGGCACTGATGGAACTATTACCTTCTGGGAGAGTCTAACTGGACACAGGTACATTCACCAGCCCATCAATCCGGATGACCCTCCCCTTGTGCCGCAGCCGAAGCCCTCCTACCCCTACCGAACCATTGGGTGCCTGTTCAATGACAAGGCTTTCCTGGCCAACTGCCAGCCCTCGGACGCAGTGGAGCTGTGCGTCTTTGACCTGAGAGACCAGTCCAGATGGAAGGCCATGAGTGAGGAGGCAGTGCGTTCCGTGTGCGCCCCTGGCTCCACCACCTCCCTCCCACCATTCCCTCCCCTCTGTGCGCCCATCGTTGACGCGGCATCGTCGAGCAACGCTCTGGAGCTGGAGATGAGATACCTGGTGTCTGAGCACAGGAAGGACCTGGGTCTCGCGACAGTTTGGGACGACCACCTCTCTTACTTGCTGTCGCCGGCGTTGTCCGCTTACGAGCTGGAACGTTCTACAGGGGTGTCCTGTGGCAACGAAGAGTCTCCATTCTGTGATGAGATCGTGTGCTGTCGTGGCGATCACGTGAGGATCGCTGTCCGAGTGCGGGTCTTTTCGTACCCAGAGTCTGCGTGTGCCGTCTGGGTCATGTTCGCCTGCAAGTATCGCTCGGTACTGTAATACTGCTGGAAGGATTCCACTTCAGTCTGCTGCGAATTGAAAATTACAGACCTGGGGAAATAAATCATAGCCAGTCTTCCAGTTGGCTCTTTTTACAACCCCTTTGTATGATAGATTGTAATTTACTAGTATGTGTATAtctattgtaaaatatatatattttttggttaatATATGATTCTGAGAGTGGTTTGCCAGATGAGCTACAATACATAGGATTAGATAGGATTGCGTTTGATCATTCGGTAAAGTGTTTACTAAAGCAGTTAACACAGCCAGAGCTTTATTACCCTGACAGCTTCACAGCGAGGTTCATAAATCATGTTTACACGATTAAAGAAATGAGTCATTGTTTTGGTTTCCAGGGCTTCTGTAAATTACTGGTCCATTCAAGTTAAGTATATTTATGccagtattttgtgtgtgttgtagttTCAAGTCCAAATGTTGATTACTCAGATAGCCTGAATTACAGACATTAAGCAAAATGAGTTTCGCTCAAAATTTACTTGATTTTACTTGATCTATAACATCTTTATTGGTACCGCAGCATTTtcacaacaaaatgtgttttatgtgaaaACGGAGGCATTAAAGCATTTGGCTGAAAAAAAGGATTCGACAAGAATACAGCAGAAGAGCTGGTGACCATTGAAACAGTAAACAGATGAGCTTCCTTTGAACGCACAAGTCCATAATGTCAGTGTTTCAACTGAGaaagtgtttcattttaacTACCTCTTTAACCAAATTTGTTTGGGGATTTTAGAAAAGCATAGCACAGGAGGGTGGAGACTTATCAGAGATATATTTCTGGTATGCTGTGATTGAATTTGGATGGTTGGACAGAAGGGGAAACGTCATTTGATAATAAATGAACTAAAATTGAATCTCAATAACAAGACAAATTAAGtgtaaatgtattcagacaaaactatttattcatgttttattgccATTTTCATGCAgcgcataaataaataagaaatggaATGGAAACAAGAAACCTGAAATCTTTTGGGTACATGTCCCCAACTGTTCAGATTTCATGCCTtagatttgcattttgcattttatggAAGGTGACTCCAGCGTTTGCTGCAccgagtttttgtttttctcattgttCATGGTCTATCAGTAGCATTTTCATCAGTACATTAGAAACAGTTACAGTAACATATGATTATTGCAGAGGATTATGCTAATGGCATGGAAAATCAGCTCCCATggtttctgttattgttttgtgtgggGAGTCGTGGGGGTATATATACTAATGGCATATGTTTTCAGTCTGGTAACCTGCTGCTGTAGAACAGTTGTTTCAGCGGTAGATCTGGCTGTGTTGCGCTGCCCTGGTGGGCCAAAGGTTATTTCCTTGTaatcttttatttcagtttattgacCTGTCCGTTCTCCTCATTTCCCCCTGGCCCAgattaaatgcatattattttactgtcaatttgattttctgttttcactcattttctcTTATTCCTTTCATCCATTAGAATAGATTTTACACACTACTGTCACTACcttgtaaagtgttttttaaattgtacatttggttacagcagattattattttttatatttttatatggtatctcaataaaacacaattcacaAAAAAATGGCTGGTCTTGTGTTACATGTGATGTGAGTTAATGCCATTTTTGATGTGGG

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase alpha-like

GO: NA

KEGG:

id description
K16457 CEP76; centrosomal protein CEP76

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002656 True 3489 mRNA 0.46 12 24966987 24978576

Neighbor

gene id symbol gene type direction distance location
AMCG00002657 NA coding upstream 17488 24938866 ~ 24949499 (+)
AMCG00002649 NA coding upstream 286998 24677306 ~ 24679989 (+)
AMCG00002646 NA coding upstream 449147 24506293 ~ 24517840 (+)
AMCG00002642 NA coding upstream 590973 24369884 ~ 24376014 (+)
AMCG00002636 dpys,LOC107686378 coding upstream 930456 24019504 ~ 24036531 (+)
AMCG00002659 NA coding downstream 151040 25129616 ~ 25134264 (+)
AMCG00002658 ncalda,ncald,LOC100692199,LOC105901278,LOC103042493,LOC106931336,LOC108268956 coding downstream 301416 25279992 ~ 25298168 (+)
AMCG00002662 ywhabl,LOC105896388,LOC102785026,LOC100692314,LOC107570839,LOC103145058,LOC105016475 coding downstream 435255 25413831 ~ 25433868 (+)
AMCG00002663 LOC103371419 coding downstream 469345 25447921 ~ 25455774 (+)
AMCG00002664 NA coding downstream 481225 25459801 ~ 25506282 (+)
G124965 NA non-coding upstream 3507 24945238 ~ 24963480 (+)
G124910 NA non-coding upstream 359453 24607296 ~ 24607534 (+)
G124908 NA non-coding upstream 385291 24579342 ~ 24581696 (+)
G124862 NA non-coding upstream 555646 24411014 ~ 24411341 (+)
G124860 NA non-coding upstream 560009 24404476 ~ 24406978 (+)
G124999 NA non-coding downstream 160404 25138980 ~ 25139272 (+)
G125005 NA non-coding downstream 321125 25299701 ~ 25303155 (+)
G125011 NA non-coding downstream 349604 25328180 ~ 25328861 (+)
G125022 NA non-coding downstream 478080 25456656 ~ 25456887 (+)
G125109 NA non-coding downstream 875582 25854158 ~ 25862306 (+)
AMCG00002650 NA other upstream 190172 24761884 ~ 24776815 (+)
G124863 NA other upstream 544374 24422252 ~ 24422613 (+)
G124769 NA other upstream 1285602 23677935 ~ 23681385 (+)
G124689 NA other upstream 1676452 23152648 ~ 23290535 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other upstream 1786944 23068124 ~ 23180043 (+)
AMCG00002661 znf706,LOC103394271,LOC100712275,LOC103364770,LOC106534503,LOC107088369 other downstream 396366 25374942 ~ 25384312 (+)
AMCG00002684 rpl30,LOC107702100,LOC107568279 other downstream 1296738 26275314 ~ 26279137 (+)
G125219 NA other downstream 1383636 26362212 ~ 26369525 (+)

Expression


Co-expression Network