G10348 (LOC108267967)


Basic Information

Item Value
gene id G10348
gene name LOC108267967
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19105081 ~ 19110849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU12275
CGTTTTAATGGTTTCGCTGTAGTTTGACCACAGCAGTACAAGCATAAAATCTTTGACTACAACAGCATTTAGAGCAACGTTTTTTGActattttgaactttttttctgaaaaagtaTTGCAATAACAGACCTTAGGCCTAGAACCTAGTACATCACAATTGCTTAAATAAAAAGAGGcaaaatacacatatttaaCGTGTATATAAACATACGCATGTACGTGTATGCAGAAATACAAGTACACActtatgcatacacacacaaaatgctggGGTacaatttttgtaaataaaaactaaaatgataCAAAGTCCATGACGGAAGCAGTCCAGTATTGACCAATAATGCTGAAAAGCTACGGTTAGCGGTGGTGTGCACAAGCATCTGATGCTTTGAGGAAAACAAACCGAGGCGCAATCAGTTTCAGTCAGCGCTCATAAGCGTACAGCCTTCTGCGGTTTTACATCACAACACAAACCTCTCAAGGCTACCTGCCATGGAGCACTGGAGAAATGAAATGGCGTTGCTATGTACATTATCTTCAGTTCCATTGATGTGGACGTGCTCAACAGTTACAGTGGACACCCAGCAGAACTGTAATTAAAAATCCCTATTTTGTTCCGACATACCACTTACACAGaatgtgtgaaataaataagtaagaaataagaATGGTAGAAGTGTCAGTGTAGTCGCTGTCTGGATAGATTATTAAAAGGCTAGAAGCATAGCACTGCATGGAAATTTAAGACTGGCTATTACATGGTTACAAAGTACCTCaaataatatagaatatatgCACTTTCTAAACAAATTCTGGACAGTGACTGATGGTTTATATGCAATACAGACATACCAACATTCCCAAAAGCAACAGCAAAGTCTCTGCTGTCatgatttgagtatttctgtacgTTTGGTAAGCTGCTCCTTTATGAAACTTGATTTCATCCTGTCTGTGTGCAAGGTAAAGCATGTCCATGTCCTAAATCACCAGTTTCACCAACCTTGGGAAtgtagggacttgtatgattttattatattacattctAGATTTGTTGTATTGGTGAATTGGAAAGAAGCTGTAAGAagtttacacatttaatttagACATCAACGTCATGACGCCTTTTTCATGAAGTGTTGTCACTGCTGTCACTTTCCGAACATGATCTAATTAAGAGCTTCCTCTGGCTGCCAAATGACTGCATGGAACCAAATCCATTttgtaaatgtgattaaaacaatGTTCATGATACAGTTTGCTAGCTAGTTCAACGCCTCCAACAGGTTGTGGGTGAAAATGTTTGTGGTAAACGTGAAAATGTTATGGTAAAATGTACACTGTAGCATAGATTTGCACCGGTATGCCAATTCTACCATTAAACTGCAAATTATACAAGTTATGTTATTTGGGgtaggattaaaaaaattatcttcTATTTCAAGCAACTCTCTTGTCCTAGAACTGCCATTCATActgttaatattgttattatccATAAGAAAAATAAGTAGTACTTTGTAATCATTCTGTAATTCATATTTAAGTATTGTTTGCAAACCTCcttgtttacaaaaaaagacaaaagcacATTTTGACTGTAGGCATTTACAAACCTGATACCACTGTGTTAAATTTTTATACCAtctatacattatattacactatTAACAATATCTTTTGTGGTTTCTACCCATTGGGTAGGATATGTGTGCATAACATATTCAAGTTATTTACAGCACcttacaaaaaggaaaaaaaaaaaaaaaaaaaaagcttatgtGCTAATATCATCTCCCATCTGAATGTAATACACAAGTACAAAATAGCACTACAAAGCTTTGCTATGTCTTTTATGAGAGAGACAgtcaataaaatgttattttgtaagCTTTGCTCCGCTTGGTTCCTTCTTGTAATGTGGCTTTGCTTTTGTAGTGAAGACAGACGCATTTTATGTTGTGCATGGGAGTGTCCAGAAAGTGACCACACCCCTTTGTAGCCAGTAAAAGGAGAGGGTACGGAGAGCTGACCTTACACTAGCTCCCCTCTCTGCATGTCCTTGGCTTTGCTCAGGACTATTGTGCTTTCCGTGCTGCCCTGGCGCGTCCTGGCACCAGGAACAGTTGGCACGGAGGAGGACTGGTTATTGCTGTGCTGGTGAAGGTAAAACGCCGTGCCTGGGTAGTGGCCCATGACCTCACTGTAGGCAGGTGGAGGGCCCTCCGTGCGTCCGTGGGCACTCCAGTTGGCGGCGCTGATGCCTGTGTTGGTGCTAGGTGGGCACGGGCCATGGCTGTCCATCAGGTCACTGTCGAAGACTGTGCGGTTGGGTGGCGCTCGCACTGACTCGCGGTTCAGCTCGAGCTGTTGATCGGGGTTGCGCAGCTGCAACGGGCATGGGCCCTGGTACGGCGGCGGCTCCTCTCCATCCGAAAGTGCGATGGTTGGTGGCAGGTCGATGTGCTGCTGCAGGAGAGGGTAGGTAGGCTGGAAACGGCTAAAACGATCTCGCTGCAGGAATGAGGGAGTGCTGAAGCGCTCACGAGGATGAGGAGC

Function

NR:

description
PREDICTED: low-density lipoprotein receptor class A domain-containing protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12275 True 2563 lncRNA 0.41 2 19105081 19110849

Neighbor

gene id symbol gene type direction distance location
fam210ab LOC108267984,LOC107552302 coding upstream 120 19092401 ~ 19104961 (+)
mc2r LOC108267950,LOC108410771 coding upstream 23361 19073900 ~ 19081720 (+)
pear1 pear1,LOC108410780 coding upstream 66144 19004319 ~ 19038937 (+)
mef2d mef2d,LOC107549240,LOC107717782,LOC107663114,LOC107597970,LOC107741762,LOC107689865 coding upstream 124709 18940196 ~ 18980372 (+)
rhbg rhbg,LOC108441913,LOC107741759,LOC107597978,LOC107689860,LOC107663197,LOC107549242 coding upstream 223665 18874262 ~ 18881416 (+)
scxb LOC108267770,LOC108436544 coding downstream 350652 19461501 ~ 19464702 (+)
ndrg1b ndrg1 coding downstream 425363 19536212 ~ 19542362 (+)
LOC113534194 sla coding downstream 446947 19557796 ~ 19562215 (+)
tmem79b tmem79 coding downstream 502821 19613670 ~ 19621043 (+)
trnaq-cug NA coding downstream 558083 19668932 ~ 19669003 (+)
G10360 NA non-coding upstream 18445 19086427 ~ 19086636 (+)
G10358 NA non-coding upstream 29572 19075308 ~ 19075509 (+)
LOC113534131 NA non-coding upstream 110183 18994250 ~ 18994898 (+)
G10330 NA non-coding upstream 117047 18984169 ~ 18988034 (+)
G10315 NA non-coding upstream 264098 18840735 ~ 18840983 (+)
G10432 NA non-coding downstream 151683 19262532 ~ 19262740 (+)
G10629 NA non-coding downstream 356060 19466909 ~ 19467130 (+)
G10636 NA non-coding downstream 380081 19490930 ~ 19491444 (+)
G10662 NA non-coding downstream 440607 19551456 ~ 19551804 (+)
G10663 NA non-coding downstream 441007 19551856 ~ 19552101 (+)
LOC113534062 LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 other upstream 748355 18350864 ~ 18356726 (+)
plekhg6 NA other upstream 849550 18198642 ~ 18255531 (+)
plppr5b plppr5,LOC107677304,LOC107712819,LOC107657749,LOC107590275,LOC107739033,LOC106578506 other upstream 1552572 17494849 ~ 17552509 (+)
LOC117596847 mrs2,LOC106606027,LOC107686945,LOC107748556,LOC107596696 other upstream 2229145 16873946 ~ 16875936 (+)
tlcd4a LOC108268992,LOC108428968,LOC107712816,LOC103024964,LOC107677262,LOC107657764,LOC107739017,LOC106570700,LOC107560653,LOC107590281 other upstream 2459948 16626139 ~ 16645133 (+)
LOC113533903 LOC100536175,LOC103025787,LOC107587908 other downstream 491649 19602498 ~ 19611431 (+)
LOC113542441 NA other downstream 616995 19727844 ~ 19733702 (+)
LOC113542572 NA other downstream 831722 19942571 ~ 19946885 (+)
G11317 NA other downstream 1437724 20548573 ~ 20551038 (+)
creb5b creb5,LOC107684542 other downstream 1445376 20556225 ~ 20612762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002650 NA misc CM030136.1 CM030136.1 24761884 ~ 24776815 (+)