ndrg1b (ndrg1)


Basic Information

Item Value
gene id ndrg1b
gene name ndrg1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19536212 ~ 19542362 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926841.2
ACAGGGTGCTTGGCTTTGTCCGAGTACTCTAATTTGAATATATCTGCATGAGAATTACTCTAGTGTCTGCAGGTCAACATGCAAAGCATGCTGGGAGCAGGAACCACACTGTAAACAAAGGATTATAAAATCCACAGAGTGAGAGTACTGTATCTATCCGTCTGATACTACAACAGCAGCAGGCATGGTGCTAGAGACCTCTGAGCATGCCTCTGGCTTTGAGGCTAAAGTTTCTGAAGATAATGTGGAGACCCCATTTGGCATAGTGCACTGCACCATGAAAGGTATCGCTAAGTTCAACCGACCTGTCATCCTGACTTACCATGACATCGGACTAAACCATAAGACCTGCTTCAGCAATCTGTTCAACCATGAGGACATGCAGGAAATCACACAATATTTCTCTGTGTGCCACATCAATGCACCTGGGCAGCAGGAAGGTGCTAGCACTATCCCCACAGGATCCACCTACCCCTCAATGGACCAGCTCTCTGAGACCATCCCTGTTGTGCTCCAGCATTTTAACATCAAGAGCGTTATTGGAATGGCAGTCGGGGCTGGAGCTTACATCCTTGCACAGTTTGCTCTGAACCACCCTGAACTGGTTGAGGGTCTTGTTCTGATTAACATTGATGCTCAGGCAGAGGACTGGATGGACTGGGCAGCACATAAGATCTCTGGCTGGACACATAATGTTCCTGATATGATCATCTCCCACCTGTTTGGAAATGAAGAGATTCACAACAACCATGACCTGATTGCAAACTTTCGACATCACATCCTGAACAACATTAACCGGAGAAACCTCGAGCTGTTTGTCAAGTCCTATAACAGTCGAAGGAATCTGGATGTGGAGAGACCTCCTCCAGGTGGAAACCTCAATGTGCGGACCCTGAAGTGCCCAACTCTTCTGGTGGTAGGAGACAGCTCTCCTGCAGTTGATGCTGTGGTTGACTTCAATTCAAGAATGAATCCAACAAAAACCACCCTACTTAAGATGGCTGACTGTGGAGGCCTTCCTCAGGTTGATCAGCCTGCCAGATTGGCAGAGGCCTTTAAGTACTTCATTCAGGGACTGGGATATATGCCTGCAGTTAGGATGACCCGCCTGTCCCGCTCTCGCACTGTCTCTGGCAGCAGCATCTCGTCTCTGGATGCCGTTCAGAGTCACAATTCCACTGGAGAGGAGCAGCACAGACACTCTCACACCAGCATCTCCATGGGCAATGACTCTGACAGCAGCACAGAGCTGAGCCTGTTGGGAACAACACACCCCAATCAGGTGTCCTGCCAGAGGCCCCACTGTTAGTGCTGTTTTTTACACACATCATTAATGGAGAACCAGAAGCTACCAGCTGCTTCATATCTTATTCTTCCGTCTCAGTTTCACTCGGCTTCAAATAAATGATGCTTTAAATTATGTGACGATTGCAGTGTTGGAACTAGAGACTGTGTATTGTACAAGaagttcagatttattttacaaagtgtgtctgtattattactattttttaatgGATCAATGTTTTGAGTTCCTTTGTTAGccatgtattatattttttatgaagGCTAAAGCAGAAGTACAAATCCTTTTACAATTTGCAGCCCGTGTAACCACAAACACTTTCATAGCCCACAACATGACAGAACCAACCAACTGTTAGAAATGCAGTTACAATTGTAAccaaataatcaacattggCAATTAGAGAAAATTAGCACATGCAGGCTACATAAAGCCCAATTACATAAAGCCCATAAACCTGTATTTCATATAAAGATGTTTCAATGTTGTATAAATATCTTTCACTCAATCTTTggaatgcattttattttaaaattgtaacatttattgtaataataaaacatatttgtcTCA
>XM_026926842.2
TGGAGTAGAGGATCGCCATTTGCCTTTCCTGCTTCACCACATGCAGCACGTCGAGCTCGTCCTCCTTCAGACACACACGCCTACCGCTTATCACTGATGTAATCAAGCTGATCACCACTGATTAACACAATAGTGTCAGGGTTCAGAGTGGGAACTGCAGAGCTGAGATCTCACCTTACCAGTCACGTGATTTTTAATAGCAACAATAGGAATGTTGATTACAATTAAACAAATTGAGGACATATATTAATCTTCACACCAGTTCATATTCTGCTAATACAATATGAAATCCTTGAGTGATAAGAGGTCAACATGCAAAGCATGCTGGGAGCAGGAACCACACTGTAAACAAAGGATTATAAAATCCACAGAGTGAGAGTACTGTATCTATCCGTCTGATACTACAACAGCAGCAGGCATGGTGCTAGAGACCTCTGAGCATGCCTCTGGCTTTGAGGCTAAAGTTTCTGAAGATAATGTGGAGACCCCATTTGGCATAGTGCACTGCACCATGAAAGGTATCGCTAAGTTCAACCGACCTGTCATCCTGACTTACCATGACATCGGACTAAACCATAAGACCTGCTTCAGCAATCTGTTCAACCATGAGGACATGCAGGAAATCACACAATATTTCTCTGTGTGCCACATCAATGCACCTGGGCAGCAGGAAGGTGCTAGCACTATCCCCACAGGATCCACCTACCCCTCAATGGACCAGCTCTCTGAGACCATCCCTGTTGTGCTCCAGCATTTTAACATCAAGAGCGTTATTGGAATGGCAGTCGGGGCTGGAGCTTACATCCTTGCACAGTTTGCTCTGAACCACCCTGAACTGGTTGAGGGTCTTGTTCTGATTAACATTGATGCTCAGGCAGAGGACTGGATGGACTGGGCAGCACATAAGATCTCTGGCTGGACACATAATGTTCCTGATATGATCATCTCCCACCTGTTTGGAAATGAAGAGATTCACAACAACCATGACCTGATTGCAAACTTTCGACATCACATCCTGAACAACATTAACCGGAGAAACCTCGAGCTGTTTGTCAAGTCCTATAACAGTCGAAGGAATCTGGATGTGGAGAGACCTCCTCCAGGTGGAAACCTCAATGTGCGGACCCTGAAGTGCCCAACTCTTCTGGTGGTAGGAGACAGCTCTCCTGCAGTTGATGCTGTGGTTGACTTCAATTCAAGAATGAATCCAACAAAAACCACCCTACTTAAGATGGCTGACTGTGGAGGCCTTCCTCAGGTTGATCAGCCTGCCAGATTGGCAGAGGCCTTTAAGTACTTCATTCAGGGACTGGGATATATGCCTGCAGTTAGGATGACCCGCCTGTCCCGCTCTCGCACTGTCTCTGGCAGCAGCATCTCGTCTCTGGATGCCGTTCAGAGTCACAATTCCACTGGAGAGGAGCAGCACAGACACTCTCACACCAGCATCTCCATGGGCAATGACTCTGACAGCAGCACAGAGCTGAGCCTGTTGGGAACAACACACCCCAATCAGGTGTCCTGCCAGAGGCCCCACTGTTAGTGCTGTTTTTTACACACATCATTAATGGAGAACCAGAAGCTACCAGCTGCTTCATATCTTATTCTTCCGTCTCAGTTTCACTCGGCTTCAAATAAATGATGCTTTAAATTATGTGACGATTGCAGTGTTGGAACTAGAGACTGTGTATTGTACAAGaagttcagatttattttacaaagtgtgtctgtattattactattttttaatgGATCAATGTTTTGAGTTCCTTTGTTAGccatgtattatattttttatgaagGCTAAAGCAGAAGTACAAATCCTTTTACAATTTGCAGCCCGTGTAACCACAAACACTTTCATAGCCCACAACATGACAGAACCAACCAACTGTTAGAAATGCAGTTACAATTGTAAccaaataatcaacattggCAATTAGAGAAAATTAGCACATGCAGGCTACATAAAGCCCAATTACATAAAGCCCATAAACCTGTATTTCATATAAAGATGTTTCAATGTTGTATAAATATCTTTCACTCAATCTTTggaatgcattttattttaaaattgtaacatttattgtaataataaaacatatttgtcTCA

Function

symbol description
ndrg1 Enables cadherin binding activity; small GTPase binding activity; and tubulin binding activity. Involved in DNA damage response, signal transduction by p53 class mediator and cellular response to hypoxia. Located in several cellular components, including adherens junction; microtubule cytoskeleton; and recycling endosome membrane. Implicated in Charcot-Marie-Tooth disease type 4D.

NR:

description
PREDICTED: protein NDRG1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926841.2 False 1879 mRNA 0.44 14 19536539 19542362
XM_026926842.2 True 2113 mRNA 0.44 15 19536212 19542362

Neighbor

gene id symbol gene type direction distance location
scxb LOC108267770,LOC108436544 coding upstream 71510 19461501 ~ 19464702 (+)
fam210ab LOC108267984,LOC107552302 coding upstream 431251 19092401 ~ 19104961 (+)
mc2r LOC108267950,LOC108410771 coding upstream 454492 19073900 ~ 19081720 (+)
pear1 pear1,LOC108410780 coding upstream 497275 19004319 ~ 19038937 (+)
mef2d mef2d,LOC107549240,LOC107717782,LOC107663114,LOC107597970,LOC107741762,LOC107689865 coding upstream 555840 18940196 ~ 18980372 (+)
LOC113534194 sla coding downstream 15434 19557796 ~ 19562215 (+)
tmem79b tmem79 coding downstream 71308 19613670 ~ 19621043 (+)
trnaq-cug NA coding downstream 126570 19668932 ~ 19669003 (+)
si:dkey-239n17.4 si:dkey-239n17.4,LOC108267606,LOC103022359,LOC108436572,LOC107549232,LOC107741768 coding downstream 263157 19805519 ~ 19814849 (+)
syt11b LOC108267614,LOC108436571 coding downstream 274058 19816420 ~ 19827597 (+)
G10636 NA non-coding upstream 44768 19490930 ~ 19491444 (+)
G10629 NA non-coding upstream 69082 19466909 ~ 19467130 (+)
G10432 NA non-coding upstream 273472 19262532 ~ 19262740 (+)
G10348 LOC108267967 non-coding upstream 425363 19105081 ~ 19110849 (+)
G10360 NA non-coding upstream 449576 19086427 ~ 19086636 (+)
G10662 NA non-coding downstream 9094 19551456 ~ 19551804 (+)
G10663 NA non-coding downstream 9494 19551856 ~ 19552101 (+)
G10664 NA non-coding downstream 14185 19556547 ~ 19556778 (+)
G10668 NA non-coding downstream 21827 19564189 ~ 19564392 (+)
G10669 NA non-coding downstream 22505 19564867 ~ 19565075 (+)
LOC113534062 LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 other upstream 1179486 18350864 ~ 18356726 (+)
plekhg6 NA other upstream 1280681 18198642 ~ 18255531 (+)
plppr5b plppr5,LOC107677304,LOC107712819,LOC107657749,LOC107590275,LOC107739033,LOC106578506 other upstream 1983703 17494849 ~ 17552509 (+)
LOC117596847 mrs2,LOC106606027,LOC107686945,LOC107748556,LOC107596696 other upstream 2660276 16873946 ~ 16875936 (+)
tlcd4a LOC108268992,LOC108428968,LOC107712816,LOC103024964,LOC107677262,LOC107657764,LOC107739017,LOC106570700,LOC107560653,LOC107590281 other upstream 2891079 16626139 ~ 16645133 (+)
LOC113533903 LOC100536175,LOC103025787,LOC107587908 other downstream 60136 19602498 ~ 19611431 (+)
LOC113542441 NA other downstream 185482 19727844 ~ 19733702 (+)
LOC113542572 NA other downstream 400209 19942571 ~ 19946885 (+)
G11317 NA other downstream 1006211 20548573 ~ 20551038 (+)
creb5b creb5,LOC107684542 other downstream 1013863 20556225 ~ 20612762 (+)

Expression


Co-expression Network