si:dkey-239n17.4 (si:dkey-239n17.4,LOC108267606,LOC103022359,LOC108436572,LOC107549232,LOC107741768)


Basic Information

Item Value
gene id si:dkey-239n17.4
gene name si:dkey-239n17.4,LOC108267606,LOC103022359,LOC108436572,LOC107549232,LOC107741768
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19805519 ~ 19814849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939955.2
tctctctctctctctctgggagcGGCAGGATGTGCGAATGAGGGCGcgagacagataaacagagagacacgCAGAACTTCAGCAAAGGGACAGAGGAGGAGACAGCAAAACATTTAGGACTATTTACACACGTGACACCTCAACTCCGGCACAAGTATGTCTGTGAACTCTCCCAGTAGCAGTGATGCATGTTTGAGCATCGTTCACAGTCTGATGTGCCACCGGCAGGGTGGAGAGAACGAGGGCTTTGCCAAGCGTGCCATCGAGAGCCTTGTGAAGAAACTAAAAGAGAAGAAGGACGAGCTGGATTCTCTTATAACCGCCATCACAACTAACGGTGTCCACCCCAGCAAATGTGTCACCATTCAGAGGACGCTGGATGGCAGGCTGCAGGTAGCAGGGCGAAAAGGCTTTCCTCATGTCATATATGCTCGACTGTGGCGTTGGCCAGACCTCCACAAAAACGAGCTCAAACATGTCAAGTTCTGCCAGTATGCCTTCGATCTCAAGTACGACAATGTATGTGTCAACCCCTATCACTATGAACGGGTGGTGTCTCCAGGCATCGTTGGACTAAGCTTGCAGACTACAGCCAGGCCGATAAAGGAAGAGTATATCCATGACTGTATCCAGTTGGACGGTCCAGCCAGAATGCCCTCCCAGCAGGACCATCATGCCCCAGAACACTATAGCCAACAGCTGCCCCCACTCCAGCTGCCACCAGAGCCCCATCATCACGCCACTCCATCAGTAACCATCTACCCAAGCCTGCCCCTCTCACCACCTTCGAGCAGCTCCAGATTGTCCCTGCAGGGTAGCCATCCGGAGGGCCTACTGCAGATCGCCTCTGCTCAAAGCAGGGCTTTGGCATCCTGTTCTCCCCCCACcacgcctacacacacaccaacaaacacaacaacacacagccAGACCTCAGCCCAACAACCTGATGCAGATCGCTGCAGTCAGGGTGATTACAGCACCTCCAAACAGACACAGGCACAGACCTCCTACCACACAACAACTTGGACAGGCACGAGCACTGCCTCCTACACACCTATGGGGTCCCAGCAGAATGGGCGGAGTCACCAGCAGGGTCCTCCCCACCACACTGGTCATTTCTGGTCTCAACATCACACTCCCACCTCATACCCACAGCCAGTCTCCAACCATCCAGGTCCAGAGTTCTGGTGTTCAATCTCATACTTTGAGATGGACATCCAGGTGGGGGAGATGTTTAAGGTCCTGGCTAACTGTCCGCTGGTAACTATAGACGGCTATGTGGATCCATCTGGAGGAGACCGCTTCTGTCTGGGGCAACTGAGCAATGTGCATCGCACAGATGCTAGTGAGAGAGCACGGCTCCACATTGGTAAAGGTGTGCAGCTAGAGTGTCGTGGGGAGGGAGACGTGTGGATGCGATGTCTCAGTGACCATGCTGTCTTTGTGCAGAGCTACTACCTGGACAGGGAGGCAGGAAGAGCACCAGGGGATGCTGTGCACAAAATCTACCCAGGAGCTTATGTCAAAgTATTTGACCTGCGTCAATGCCATAGGCAGATGCAGCAGCAAGCAGCAACTGCACAGGCAGCTGCAGCTGCACAGGCTGCAGCAGTGGCTGGAAATATTCCAGGACCCGGCAGTGTGGGGGGCATCGCCCCCGCCATCAGTTTCTCTGCTGCAGCGGGCATAGGAGTTGATGATTTGCGTCGGCTGTGTATATTGCGTCTGAGCTTTGTGAAGGGTTGGGGGCCGGATTACCCACGCCAGAGCATCAAACAAACCCCCTGCTGGATAGAAGTGCATCTCCACCGGGCATTGCAGCTGCTGGATGAGGTGCTACACACCATGCCCCTCGCTGAGCCCAGCCCTGCCAACTGACCTGGTAACAGAGCTTAATCAAACACAGCATCTCACAAGAATCCACAACAGGGAACGAtggaggagagatggagagatgatgaTATGCTCCATAGCTTCTCCCACATACACAGCATGCCCACGTGAACAGACAGTGACTCATGGAAGGAGGCAGACACTTACGCAAGCTTTCCATTGCCATGGCCAGCAGACTGAGTGGACCTCTGCGCTGACCAGTGTATAGTCCAATCATAAGACTGTTGACTCACATGGAAATAAAGACCAGAGAAAGATGTTCTTAAGGCACAGGTGAACAGGAGGCCCTGGAATTGGTGAAGTGCTGAGTAGCGCGCACTTTGAGAGATATCTGTGGGTCGTCCGAACAAGAACTAATGAGTCATGGTATTCTTGGCCCAGGATATGATTTGAAATGCTGAGTTATTCTGTAAGAGCAGTGATACCACAAACACCAAACTTTGCTAAATATAGGCAATGGATAGACAatcatttttaacttttgttACAATGTGTTTTTGTAACTATGGGATAGTATTTTAGCAAAAACAAATAGTATTTTAGCACCAAATTCTAAATAATTGGAACAcattatttcattgtttataaTGCCAAAGATGGATTTATAGCACTGCAATACCAAAAAGGCAGCTTCTTTAGAGTAAAGCAAAGCACAAGGATTTCCTCATGTTTAATGCATCTTGTCTTACTTATTAGGCATGAGATCGTTGATTACTTCGGAGAGTAGAGTATGCTGCACCTAATTTCATGCTGCAACCCTTTCTCATCATGAAGACTGTCTGTTTTACAAGAACTTTTACGTGTTTCTTTTTGTTCCACCCCACCTCCAACTTTTTGTGCCTTATTACCAATGAGTACATGCTGTGCCCGTTTTATATAAATCTatgcaaaatcattttttatgtttattactgAGCCCGTTTGTTTTTCACGTCCAGACTGACCTAGTCAGTGACTTATGTTTTAGAAGTTTCAGACTGTTTGAAGAGGTTTAGTAgagagtagtttttttttttgtttttttttgccacttgTACTGTTAACTGCTTTGATTTCCCTTTCTATATGCCATTCAAGTGTGTCTCCCACACACATTAAATGTTCCCTTCTTCacttatttaaacatttaggaGACTTGTGGTTGTTCTCTTGGAATTCAGCTTCATAAAGTTATTGTAATTCTTTAAAGTATAAACAAATTTTGTGTCTGAAAAAGCATTAAGTATGCAAAAATATACtacaaatatttaatagtaATGATGGCAATATGGCATCATTTTCAACAGGTTTCCtgagctaagaaaaaaaaaagtcattgtaGATGAAGTTTTTGAAGTAGCTGCACACACTTTAGACATACTGTAGCTACAAGTCATAAGTGGACTCATAAACTGAGCACCAAAAAATGCCACACACAAACTTTACTCCTGAGGTATGACGAGTTATACAATAGTGTATGCTAACTTTCAGGTTTTGCACACCATGATCTTGTATAATATTACTGGAAGCTATGATAAGTTAAACGTCACAAGATTTCCCTTCATCTTTGTGAACATTATTAAAGACATAGTTTGAACCCAAACCCTTGTTTTAACTCAATACTTTATTTAGTATTGTACAGTCTTTTTTgaagaaataattaaagaaagaaagcaatgacagta

Function

NR:

description
PREDICTED: mothers against decapentaplegic homolog 4-like

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04501 SMAD4; mothers against decapentaplegic homolog 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939955.2 True 3560 mRNA 0.46 12 19805519 19814849

Neighbor

gene id symbol gene type direction distance location
trnaq-cug NA coding upstream 136516 19668932 ~ 19669003 (+)
tmem79b tmem79 coding upstream 184476 19613670 ~ 19621043 (+)
LOC113534194 sla coding upstream 243304 19557796 ~ 19562215 (+)
ndrg1b ndrg1 coding upstream 263157 19536212 ~ 19542362 (+)
scxb LOC108267770,LOC108436544 coding upstream 340817 19461501 ~ 19464702 (+)
syt11b LOC108267614,LOC108436571 coding downstream 1571 19816420 ~ 19827597 (+)
dcst1 dcst1 coding downstream 51689 19866538 ~ 19887317 (+)
adam15 adam15 coding downstream 73263 19888112 ~ 19914579 (+)
si:dkey-7j14.6 NA coding downstream 102096 19916945 ~ 19923840 (+)
si:dkey-7j14.5 si:dkey-7j14.5,LOC108269355,LOC108436563,LOC107666850,LOC107719133,LOC107686177,LOC107592309 coding downstream 109200 19924049 ~ 19930624 (+)
G10763 NA non-coding upstream 59590 19745661 ~ 19745929 (+)
G10760 NA non-coding upstream 63024 19742126 ~ 19742495 (+)
G10748 NA non-coding upstream 70714 19694287 ~ 19734805 (+)
G10671 cct3,LOC105896170,LOC100194668 non-coding upstream 180495 19623097 ~ 19625024 (+)
G10678 NA non-coding upstream 221340 19583977 ~ 19584179 (+)
G10809 NA non-coding downstream 14443 19829292 ~ 19829497 (+)
G10828 NA non-coding downstream 55397 19870246 ~ 19870450 (+)
G10904 NA non-coding downstream 132256 19947105 ~ 19947437 (+)
G10957 NA non-coding downstream 213273 20028122 ~ 20072852 (+)
LOC117597377 NA non-coding downstream 399942 20214791 ~ 20217076 (+)
LOC113542441 NA other upstream 71817 19727844 ~ 19733702 (+)
LOC113533903 LOC100536175,LOC103025787,LOC107587908 other upstream 194088 19602498 ~ 19611431 (+)
LOC113534062 LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 other upstream 1448793 18350864 ~ 18356726 (+)
plekhg6 NA other upstream 1549988 18198642 ~ 18255531 (+)
plppr5b plppr5,LOC107677304,LOC107712819,LOC107657749,LOC107590275,LOC107739033,LOC106578506 other upstream 2253010 17494849 ~ 17552509 (+)
LOC113542572 NA other downstream 127722 19942571 ~ 19946885 (+)
G11317 NA other downstream 733724 20548573 ~ 20551038 (+)
creb5b creb5,LOC107684542 other downstream 741376 20556225 ~ 20612762 (+)
G11401 NA other downstream 859371 20674220 ~ 20676773 (+)
nbeal2 nbeal2 other downstream 1561338 21376187 ~ 21437329 (+)

Expression


Co-expression Network