G10828


Basic Information

Item Value
gene id G10828
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19870246 ~ 19870450 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU12864
CTTttctaaaagtaaaataaacaaaactttaacAGAAATTAAGCCAAATAAAAGTGAATGTGATTATCTCTAAGATAAAAAAGATCTTGCAAACCAAGGTTCAAGTCAGAATTATGCTAATTATGCTTATTATGCAGCCATGTTGCATACAGCTGCTAGAGAATGATTTCAagtgatacactatatggccaaaagctatgtggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12864 True 205 lncRNA 0.31 1 19870246 19870450

Neighbor

gene id symbol gene type direction distance location
syt11b LOC108267614,LOC108436571 coding upstream 42649 19816420 ~ 19827597 (+)
si:dkey-239n17.4 si:dkey-239n17.4,LOC108267606,LOC103022359,LOC108436572,LOC107549232,LOC107741768 coding upstream 55397 19805519 ~ 19814849 (+)
trnaq-cug NA coding upstream 201243 19668932 ~ 19669003 (+)
tmem79b tmem79 coding upstream 249203 19613670 ~ 19621043 (+)
LOC113534194 sla coding upstream 308031 19557796 ~ 19562215 (+)
adam15 adam15 coding downstream 17662 19888112 ~ 19914579 (+)
si:dkey-7j14.6 NA coding downstream 46495 19916945 ~ 19923840 (+)
si:dkey-7j14.5 si:dkey-7j14.5,LOC108269355,LOC108436563,LOC107666850,LOC107719133,LOC107686177,LOC107592309 coding downstream 53599 19924049 ~ 19930624 (+)
nudt17 nudt17 coding downstream 62330 19932780 ~ 19938245 (+)
mtx1a mtx1a,LOC108267565,LOC108436561,LOC107719130,LOC107666872,LOC107592422 coding downstream 79208 19949658 ~ 19963557 (+)
G10809 NA non-coding upstream 40749 19829292 ~ 19829497 (+)
G10763 NA non-coding upstream 124317 19745661 ~ 19745929 (+)
G10760 NA non-coding upstream 127751 19742126 ~ 19742495 (+)
G10748 NA non-coding upstream 135441 19694287 ~ 19734805 (+)
G10671 cct3,LOC105896170,LOC100194668 non-coding upstream 245222 19623097 ~ 19625024 (+)
G10904 NA non-coding downstream 76655 19947105 ~ 19947437 (+)
G10957 NA non-coding downstream 157672 20028122 ~ 20072852 (+)
LOC117597377 NA non-coding downstream 344341 20214791 ~ 20217076 (+)
G11048 NA non-coding downstream 362750 20233200 ~ 20246021 (+)
LOC113542301 NA non-coding downstream 364432 20234882 ~ 20235504 (+)
LOC113542441 NA other upstream 136544 19727844 ~ 19733702 (+)
LOC113533903 LOC100536175,LOC103025787,LOC107587908 other upstream 258815 19602498 ~ 19611431 (+)
LOC113534062 LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 other upstream 1513520 18350864 ~ 18356726 (+)
plekhg6 NA other upstream 1614715 18198642 ~ 18255531 (+)
plppr5b plppr5,LOC107677304,LOC107712819,LOC107657749,LOC107590275,LOC107739033,LOC106578506 other upstream 2317737 17494849 ~ 17552509 (+)
LOC113542572 NA other downstream 72121 19942571 ~ 19946885 (+)
G11317 NA other downstream 678123 20548573 ~ 20551038 (+)
creb5b creb5,LOC107684542 other downstream 685775 20556225 ~ 20612762 (+)
G11401 NA other downstream 803770 20674220 ~ 20676773 (+)
nbeal2 nbeal2 other downstream 1505737 21376187 ~ 21437329 (+)

Expression


Co-expression Network