G10663


Basic Information

Item Value
gene id G10663
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19551856 ~ 19552101 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU12664
ACGAGCTCAGAACTGGCACGTATTGGGACCAGAAGGAACACTGGTGTGCCTGGAGGCTCTTGTGGTTACTGAGGGTAGGAGACAGCTCCTTATAGTTCTGTCCATTTGGGTGGGGCAGGAACTGAGGCCAGGGAGGCAAAAGCTCACTAAAAGACGCTCCAGACATGGAGAGAGGCAGGTTGGGGTTTCTGCACAGAGAAttatggaaagaaagagaagcacAAAGCAACGTGAATAGGAAAATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12664 True 246 lncRNA 0.50 1 19551856 19552101

Neighbor

gene id symbol gene type direction distance location
ndrg1b ndrg1 coding upstream 9494 19536212 ~ 19542362 (+)
scxb LOC108267770,LOC108436544 coding upstream 87154 19461501 ~ 19464702 (+)
fam210ab LOC108267984,LOC107552302 coding upstream 446895 19092401 ~ 19104961 (+)
mc2r LOC108267950,LOC108410771 coding upstream 470136 19073900 ~ 19081720 (+)
pear1 pear1,LOC108410780 coding upstream 512919 19004319 ~ 19038937 (+)
LOC113534194 sla coding downstream 5695 19557796 ~ 19562215 (+)
tmem79b tmem79 coding downstream 61569 19613670 ~ 19621043 (+)
trnaq-cug NA coding downstream 116831 19668932 ~ 19669003 (+)
si:dkey-239n17.4 si:dkey-239n17.4,LOC108267606,LOC103022359,LOC108436572,LOC107549232,LOC107741768 coding downstream 253418 19805519 ~ 19814849 (+)
syt11b LOC108267614,LOC108436571 coding downstream 264319 19816420 ~ 19827597 (+)
G10662 NA non-coding upstream 52 19551456 ~ 19551804 (+)
G10636 NA non-coding upstream 60412 19490930 ~ 19491444 (+)
G10629 NA non-coding upstream 84726 19466909 ~ 19467130 (+)
G10432 NA non-coding upstream 289116 19262532 ~ 19262740 (+)
G10348 LOC108267967 non-coding upstream 441007 19105081 ~ 19110849 (+)
G10664 NA non-coding downstream 4446 19556547 ~ 19556778 (+)
G10668 NA non-coding downstream 12088 19564189 ~ 19564392 (+)
G10669 NA non-coding downstream 12766 19564867 ~ 19565075 (+)
G10670 NA non-coding downstream 15587 19567688 ~ 19567895 (+)
G10673 NA non-coding downstream 23414 19575515 ~ 19575905 (+)
LOC113534062 LOC108263335,LOC108428912,LOC107749301,LOC107685608,LOC107596760,LOC107678125 other upstream 1195130 18350864 ~ 18356726 (+)
plekhg6 NA other upstream 1296325 18198642 ~ 18255531 (+)
plppr5b plppr5,LOC107677304,LOC107712819,LOC107657749,LOC107590275,LOC107739033,LOC106578506 other upstream 1999347 17494849 ~ 17552509 (+)
LOC117596847 mrs2,LOC106606027,LOC107686945,LOC107748556,LOC107596696 other upstream 2675920 16873946 ~ 16875936 (+)
tlcd4a LOC108268992,LOC108428968,LOC107712816,LOC103024964,LOC107677262,LOC107657764,LOC107739017,LOC106570700,LOC107560653,LOC107590281 other upstream 2906723 16626139 ~ 16645133 (+)
LOC113533903 LOC100536175,LOC103025787,LOC107587908 other downstream 50397 19602498 ~ 19611431 (+)
LOC113542441 NA other downstream 175743 19727844 ~ 19733702 (+)
LOC113542572 NA other downstream 390470 19942571 ~ 19946885 (+)
G11317 NA other downstream 996472 20548573 ~ 20551038 (+)
creb5b creb5,LOC107684542 other downstream 1004124 20556225 ~ 20612762 (+)

Expression


Co-expression Network