RNA id: TU12275


Basic Information

Item Value
RNA id TU12275
length 2563
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G10348
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 19105081 ~ 19110849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTTTAATGGTTTCGCTGTAGTTTGACCACAGCAGTACAAGCATAAAATCTTTGACTACAACAGCATTTAGAGCAACGTTTTTTGActattttgaactttttttctgaaaaagtaTTGCAATAACAGACCTTAGGCCTAGAACCTAGTACATCACAATTGCTTAAATAAAAAGAGGcaaaatacacatatttaaCGTGTATATAAACATACGCATGTACGTGTATGCAGAAATACAAGTACACActtatgcatacacacacaaaatgctggGGTacaatttttgtaaataaaaactaaaatgataCAAAGTCCATGACGGAAGCAGTCCAGTATTGACCAATAATGCTGAAAAGCTACGGTTAGCGGTGGTGTGCACAAGCATCTGATGCTTTGAGGAAAACAAACCGAGGCGCAATCAGTTTCAGTCAGCGCTCATAAGCGTACAGCCTTCTGCGGTTTTACATCACAACACAAACCTCTCAAGGCTACCTGCCATGGAGCACTGGAGAAATGAAATGGCGTTGCTATGTACATTATCTTCAGTTCCATTGATGTGGACGTGCTCAACAGTTACAGTGGACACCCAGCAGAACTGTAATTAAAAATCCCTATTTTGTTCCGACATACCACTTACACAGaatgtgtgaaataaataagtaagaaataagaATGGTAGAAGTGTCAGTGTAGTCGCTGTCTGGATAGATTATTAAAAGGCTAGAAGCATAGCACTGCATGGAAATTTAAGACTGGCTATTACATGGTTACAAAGTACCTCaaataatatagaatatatgCACTTTCTAAACAAATTCTGGACAGTGACTGATGGTTTATATGCAATACAGACATACCAACATTCCCAAAAGCAACAGCAAAGTCTCTGCTGTCatgatttgagtatttctgtacgTTTGGTAAGCTGCTCCTTTATGAAACTTGATTTCATCCTGTCTGTGTGCAAGGTAAAGCATGTCCATGTCCTAAATCACCAGTTTCACCAACCTTGGGAAtgtagggacttgtatgattttattatattacattctAGATTTGTTGTATTGGTGAATTGGAAAGAAGCTGTAAGAagtttacacatttaatttagACATCAACGTCATGACGCCTTTTTCATGAAGTGTTGTCACTGCTGTCACTTTCCGAACATGATCTAATTAAGAGCTTCCTCTGGCTGCCAAATGACTGCATGGAACCAAATCCATTttgtaaatgtgattaaaacaatGTTCATGATACAGTTTGCTAGCTAGTTCAACGCCTCCAACAGGTTGTGGGTGAAAATGTTTGTGGTAAACGTGAAAATGTTATGGTAAAATGTACACTGTAGCATAGATTTGCACCGGTATGCCAATTCTACCATTAAACTGCAAATTATACAAGTTATGTTATTTGGGgtaggattaaaaaaattatcttcTATTTCAAGCAACTCTCTTGTCCTAGAACTGCCATTCATActgttaatattgttattatccATAAGAAAAATAAGTAGTACTTTGTAATCATTCTGTAATTCATATTTAAGTATTGTTTGCAAACCTCcttgtttacaaaaaaagacaaaagcacATTTTGACTGTAGGCATTTACAAACCTGATACCACTGTGTTAAATTTTTATACCAtctatacattatattacactatTAACAATATCTTTTGTGGTTTCTACCCATTGGGTAGGATATGTGTGCATAACATATTCAAGTTATTTACAGCACcttacaaaaaggaaaaaaaaaaaaaaaaaaaaagcttatgtGCTAATATCATCTCCCATCTGAATGTAATACACAAGTACAAAATAGCACTACAAAGCTTTGCTATGTCTTTTATGAGAGAGACAgtcaataaaatgttattttgtaagCTTTGCTCCGCTTGGTTCCTTCTTGTAATGTGGCTTTGCTTTTGTAGTGAAGACAGACGCATTTTATGTTGTGCATGGGAGTGTCCAGAAAGTGACCACACCCCTTTGTAGCCAGTAAAAGGAGAGGGTACGGAGAGCTGACCTTACACTAGCTCCCCTCTCTGCATGTCCTTGGCTTTGCTCAGGACTATTGTGCTTTCCGTGCTGCCCTGGCGCGTCCTGGCACCAGGAACAGTTGGCACGGAGGAGGACTGGTTATTGCTGTGCTGGTGAAGGTAAAACGCCGTGCCTGGGTAGTGGCCCATGACCTCACTGTAGGCAGGTGGAGGGCCCTCCGTGCGTCCGTGGGCACTCCAGTTGGCGGCGCTGATGCCTGTGTTGGTGCTAGGTGGGCACGGGCCATGGCTGTCCATCAGGTCACTGTCGAAGACTGTGCGGTTGGGTGGCGCTCGCACTGACTCGCGGTTCAGCTCGAGCTGTTGATCGGGGTTGCGCAGCTGCAACGGGCATGGGCCCTGGTACGGCGGCGGCTCCTCTCCATCCGAAAGTGCGATGGTTGGTGGCAGGTCGATGTGCTGCTGCAGGAGAGGGTAGGTAGGCTGGAAACGGCTAAAACGATCTCGCTGCAGGAATGAGGGAGTGCTGAAGCGCTCACGAGGATGAGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12291 lncRNA upstream 18445 19086427 ~ 19086636 (+) True G10360
TU12289 lncRNA upstream 29572 19075308 ~ 19075509 (+) True G10358
XR_004578602.1 lncRNA upstream 110183 18994250 ~ 18994898 (+) True LOC113534131
TU12256 lncRNA upstream 117047 18984169 ~ 18988034 (+) True G10330
TU12239 lncRNA upstream 264098 18840735 ~ 18840983 (+) True G10315
TU12383 lncRNA downstream 151683 19262532 ~ 19262740 (+) True G10432
TU12623 lncRNA downstream 356060 19466909 ~ 19467130 (+) True G10629
TU12634 lncRNA downstream 380081 19490930 ~ 19491444 (+) True G10636
TU12663 lncRNA downstream 440607 19551456 ~ 19551804 (+) True G10662
TU12664 lncRNA downstream 441007 19551856 ~ 19552101 (+) True G10663
XM_026926554.2 mRNA upstream 120 19092401 ~ 19104961 (+) True fam210ab
XM_026926771.2 mRNA upstream 23361 19073900 ~ 19081720 (+) False mc2r
XM_026926769.2 mRNA upstream 23361 19080601 ~ 19081720 (+) True mc2r
XM_034308986.1 mRNA upstream 66144 19004319 ~ 19038937 (+) False pear1
XM_026926872.2 mRNA upstream 66144 19004320 ~ 19038937 (+) True pear1
XM_026926759.2 mRNA downstream 350652 19461501 ~ 19464702 (+) True scxb
XM_026926842.2 mRNA downstream 425363 19536212 ~ 19542362 (+) True ndrg1b
XM_026926841.2 mRNA downstream 425690 19536539 ~ 19542362 (+) False ndrg1b
XM_026926838.2 mRNA downstream 446947 19557796 ~ 19562215 (+) True LOC113534194
XM_026926354.2 mRNA downstream 491649 19602498 ~ 19611431 (+) False LOC113533903
XR_003403485.1 other upstream 934576 18170367 ~ 18170505 (+) True LOC113534245
XR_004579062.1 other upstream 1552572 17494849 ~ 17552509 (+) False plppr5b
TU10566 other upstream 2460001 16626203 ~ 16645080 (+) False tlcd4a
trnaq-cug other downstream 558083 19668932 ~ 19669003 (+) True trnaq-cug
TU12774 other downstream 616995 19727844 ~ 19733401 (+) True LOC113542441
TU12775 other downstream 619302 19730151 ~ 19733401 (+) False LOC113542441
TU13438 other downstream 1437724 20548573 ~ 20551038 (+) True G11317
TU13525 other downstream 1563371 20674220 ~ 20676773 (+) True G11401

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU156570 True 6543 lncRNA 0.38 2 CM030136.1 24769518 ~ 24776815 (+)