RNA id: TU13525


Basic Information

Item Value
RNA id TU13525
length 2180
RNA type TUCP
GC content 0.38
exon number 2
gene id G11401
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20674220 ~ 20676773 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTTAGAGTAAACTTATTACCTGTGGATTCTTTGCTTGTCTAACATCATCGTCTCTTAGCTATAAAGAGTCTGGAGTAGCGTGCAGTAAGACACAAAATATTGTGTTGATGTAAGAAAGAAGAAATTTGGTTTTAGGTTCTGGAGtcaaagaaacaggaaaactaTTGGTGCTGGGGCAAATTCTGACAGTGCTGCAAATATTTACCTGAATTTTGTGGTTTTGGTGAAGTGAACACTCCGATGGCGGACAGGATTCCCTGGTGGAAGGCCTTCACCGGCAGGGTGCTGAGCAACATCCTTAAAGACGCTGGGATTCAGCAAGATCAAAGCTCGGACAGCAAAAACTCCGGCTTCACGAGCGATGGCGTTGATGCGTCACAGCTCGAGCCTGCTTTAATCGAAGGCACGTTCAGCCGCAACCTTTCCGTCTCGCGCTCCGGCCGCTTCAAGGAAAAACGCAAGGTTCGAGCCACTTTGCCCGCAAACAAGAACTTTTACGACAGCAACACAGCCGTGGCCAAGTAGCCATGCTAACATCCTAACATCCACCacagacactgacactgaccGCAGAAGACCTCTCAAATCGaaatgaggaaagaaaaagaaaaaaactatacTAGAGGTTAATAAAAGCAATTAAAGCCACCTTAAACTCACACAATGCAAagaatttaaaacataatttgtTAATTAGGGTTATTGGAGTTAATTACCTGTTAGCCTATTTAGTCAAGCTAAATGCCATCAGCTCTGAGAAGAagggaatatttatttatatctaaatTCAGAAAAAATCTCTGCTGTAAGTTTCATTGTCAGTGGGGGTGGTGCCTTTTCATTTTACCCAGAAACGTGGATATAAAAGATTTAAAGCGCATAATTGGACCTAATTAAGAGTAGGcctaaagctttaaaggtacactacacacactaccacatcAGTGACAAGGAAGGGTACAGTTTAGTGCCCTTTTTCTTCTGAGAGtgtacacaccagcacacttaGCATACATTCAGAAAGGGGTCCCAAGTACAACCCCTAGAGGAAGACCCTTTTTAACAAGAGCCCATTTtctaagtgtgtgtttatatatgtgtgtgtgtgtgtgtgtgtgtgtgtggttatgtgGTTTGCTAGTGGGTTAATTGCCTGTTATGGAGTCTTTTCCATTCTGATGTCTCTTGTTGTTGTGGTAAATGTTAATGCAACGCCTGGCTGTTGTTCTGCTGTTTATTTGTTACTGATATGAAGGGCCACTTATTTATTATCTAAAATGTTAAAGTTTCAGTGCTTTTGTAACTGTTTGTATGAAGGATATTTACATATATGCTTAtatatgaatgtaaatgtaactaaatgTTGATGTTGGTTGTTTTATAGTCTGGTTTGGATGTATGATGTAGTTTCAAGTAACATACTTGCAGGTGGATCCCTGCTGTCATGGCAGTTCTGAATAGGATAATTTTTGCactaatggatttttttaaggATTATAATAATCAACATTCATGTGaatttaatttagaaatttCCTATATGGATATATGACAAGGTCATATAGTCAAAAACCAGTCGATATATTACTGAAAGGAGTGTTCTGTACAAGGACTACTACTGTAAGGACAAATTGTACATAATGGCAGGTTGTGTAATCTTCATAAATGGATGGAATTTGATGTTTAACAGTGTAAATGGAAGTGTGCTGTAGGCTAGTTAATACTGATACAAAAATACTGATGTCTTACTATCATGTTGTTTATCACCATGGAGTATATCACTGTTTCCTTCCCATTTTCATGGAGGttgacattaaataaacataagcACACAGCAGCAAGGCAAGTGTTAAATTATTTGGCTAGGGAGACTACCAAAGACGTTTTAAAACAGATATGCCCTTAAACTTAAGTAATTCAttgaaaatataatgaatatcaCTTCCTCTGATTTTTGCCTTGCCTAGGATATATCATGCTCAAAAAAATCAATCGGTTTTAAGGGACATTTTTTGTAATGTCATTATCCTTACCGGTACAGCATCATGTTATCAGTACAACTGCAGATTTCTACTGTTATACCAATTTATCATCACATTCCTGGTATGAACATTACATAGTAACAGGTGCTGTTTTTCACACAGcccaaaatacaaatacatcacACTTGAAATCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13519 lncRNA upstream 51947 20620826 ~ 20622273 (+) True G11395
TU13442 lncRNA upstream 61492 20609281 ~ 20612728 (+) False creb5b
TU13422 lncRNA upstream 176621 20496304 ~ 20497599 (+) True G11304
TU13421 lncRNA upstream 178030 20495319 ~ 20496190 (+) True G11303
XR_004578954.1 lncRNA upstream 227995 20443990 ~ 20446225 (+) True LOC117598261
TU13571 lncRNA downstream 55332 20732105 ~ 20810243 (+) True G11439
TU13573 lncRNA downstream 60959 20737732 ~ 20738399 (+) True G11441
TU13621 lncRNA downstream 197608 20874381 ~ 20874599 (+) True G11485
TU13623 lncRNA downstream 198845 20875618 ~ 20875888 (+) True G11487
TU13624 lncRNA downstream 199149 20875922 ~ 20876186 (+) True G11488
XM_026939755.2 mRNA upstream 465 20629370 ~ 20673755 (+) True chn2
XM_026940021.2 mRNA upstream 61458 20556225 ~ 20612762 (+) False creb5b
XM_034307355.1 mRNA upstream 61458 20556307 ~ 20612762 (+) False creb5b
XM_026940022.2 mRNA upstream 61458 20556393 ~ 20612762 (+) False creb5b
XM_026940019.2 mRNA upstream 61458 20560691 ~ 20612762 (+) True creb5b
XM_026939974.2 mRNA downstream 4547 20681320 ~ 20690235 (+) True plekha8
XM_026939547.2 mRNA downstream 88907 20765680 ~ 20799395 (+) True ahr1a
XM_026940036.2 mRNA downstream 129674 20806447 ~ 20844750 (+) False hdac9b
XM_026940037.2 mRNA downstream 145768 20822541 ~ 20844750 (+) True hdac9b
XM_026939937.2 mRNA downstream 215756 20892529 ~ 20893369 (+) True LOC113542411
TU13438 other upstream 123182 20548573 ~ 20551038 (+) True G11317
TU12774 other upstream 940819 19727844 ~ 19733401 (+) True LOC113542441
TU12775 other upstream 940819 19730151 ~ 19733401 (+) False LOC113542441
trnaq-cug other upstream 1005217 19668932 ~ 19669003 (+) True trnaq-cug
XR_003403485.1 other upstream 2503715 18170367 ~ 18170505 (+) True LOC113534245
XR_003404321.2 other downstream 699414 21376187 ~ 21432781 (+) False nbeal2
XR_004578200.1 other downstream 1265419 21942192 ~ 21945409 (+) False LOC117597357
TU14535 other downstream 1620356 22297129 ~ 22304154 (+) False dbpb
XR_004578108.1 other downstream 1712268 22389041 ~ 22470980 (+) False LOC113542324
XR_004578107.1 other downstream 1712268 22389041 ~ 22470980 (+) False LOC113542324

Expression Profile