AMCG00002624


Basic Information

Item Value
gene id AMCG00002624
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 23043824 ~ 23055716 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002624
TATGGAGACCATGAAGCCCTGGGTTCGCAGGAGCAGAACACGATTACAGACAACGTGATTGAGTCAAACAGGATGAGGACAATTACTATTCTTTCACAGTTATTGTCCAACGTCAAAATGTAATCCGATCCCTGGGAGAAAATGaGTTCGCCTCGTGCCTTAGTGTGACTGAAACCAAAACAGCTGCTGGACAAGAGAGGAGACACTACACCGTGCCCTGCTTGTAAGGAATGTGGAGATAGTGCTGCCAGGCTGTTAGAGTTGGGAGGTTGTGACAACAAGGACCAGGCCCAGAATTCGTCATGCCAAATACCAGTCCAAGTGGTCTGCAGGAGGTGCCACTACAGCCCCTGGTGCTCTGCAAGCTGTGCCTTAGCGAATACCCCCTCGAGGACAGGAGCCAACTTCATACGTGCAACTGCGTCTTCTGTACCCCGTGCCTGCAGCAGTATGTGCAGTTTGCAATCAAGGAGGGTTGTGGAGCTCCTGTCACCTGTCCAGACATGGCCTGTCTGAAGAAGGGAACATTGCTGGATTCTGAGATTGCCTGCTTGGCCCCTTCTGATCAAGTTCAGCTTTATCAGCGGCTGCGGTTCGAAAGAGAGGTGCAGCTGGATCCTGATAAAACCTGGTGTCCTGTCTTGGGATGTCAAGCTGTCTGCAGCATCGGGCAGCACAGCAATGCCCAgccagtgtctgtgttgtgtcCTGCTTGCGGTGTTGTATTCTGCTCAGTGTGCAAGGGGGACTGGCAGCCAGGCCATTCCTGCTCCGAACGCCGGTCTCTGAATTTGCCTTCTGTGGATGACAGCGTTCAGATCAGCAACGAACCAGACGCCCCTGTCAAGCAGTGTCCGGTGTGCGGCGTCTACATCGAGAGGAACCAAGGGTGTGCTCAGATGATGTGCAAGAGCTGCAAGCACACCTTTTGTTGGTACTGTCTTCAGAATTTAGATGGCGACATATTCCTGAGGCATTACGATAAAGGACCGTGCAGAAATAAACTGGGCCACTCGCGGGCTTCAGTGATGTGGAATCGAACACAGGTGGTGGGCATCTTGGTTGGTATGAGTTTAATTGTCCTGGTGACCTCACCACTCCTTGTGCTGGCATCGCCCTGTATAATCTGCTGCATCTGCAAGTCCTGTAGaggcaaaaaaaagaagaaggtcAACCACACAGAAACGGGAATATagctgaaatacatatattagcTATATATCCATTTTTCCATGTGCCATATCCCACATTTCTTATAATCCGATACCAAATCCTTCTCCGTAGGTGCACAAGTGCCTATATTACTGTGCCTGCATGTTCAGGTCCGGTGCTGGTCTTACCTTCCAGTCTAACAGTTCAGAAGAAGGCAGGCTGGATCAAGCGCTGGGGAATCTCTTCTTCGATATGaactctttgtttttgtataggTGTGTGGGAAGCAGTACAGGACATGGGAGGCCAgtctttattgttttgtctGGATAAACTGTTCTTTTTCATATGGTGGGcaaagagtaaaataaaaaggtaaaattgAAGGGCGTAAATGATATCGGCAGCATATtcctgtattttcatttaactttAGTTGCTCGTGGTATTTCAGTGTGGCGTACCTGAAGAATTTTCCTGCAGCTGCCACAATATTCCTGTGTTCACGCAATTGTTGAACTTCTACACATTTGCTTTGCTATTTATTAGCAAGCCGGGATTCTGTTTTATTGATAGAATACATATTAATACCTTGTTGCTTGGCTTCCACATATACCTTTTGTACACATCTCCTTGGTTCATGTAAAGACACAGAACACACCTAAATCTCATTGGAAAAGCGTAGGAAATACCAAAATATAATTGGGTTTAACCAGTTTAACATTGCAATCATTCCTTTaactttttcattataatttatgCTGTTCTGTGTACtgtaaaaaatagttttctgaAGTATAACTTGTACTGTGTAAATAATGCTCATTAACTATGTGTAATGTATATgtcttgtttatattttttaaatcttttgtaACAGTCAACTGTTATAAAAACATGATCATTAAAACCTGATTTGCAAAGTataa

Function

GO: NA

KEGG:

id description
K11975 RNF144; E3 ubiquitin-protein ligase RNF144

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002624 True 2081 mRNA 0.45 9 23043824 23055716

Neighbor

gene id symbol gene type direction distance location
AMCG00002619 NA coding upstream 10239 23028636 ~ 23033585 (+)
AMCG00002621 NA coding upstream 44339 22996873 ~ 22999485 (+)
AMCG00002613 NA coding upstream 91996 22947203 ~ 22951828 (+)
AMCG00002612 LOC103360969 coding upstream 97903 22927289 ~ 22945921 (+)
AMCG00002618 NA coding upstream 137312 22904029 ~ 22906512 (+)
AMCG00002620 NA coding downstream 1066 23056782 ~ 23067800 (+)
AMCG00002630 NA coding downstream 351850 23407566 ~ 23407966 (+)
AMCG00002631 NA coding downstream 597256 23652972 ~ 23677437 (+)
AMCG00002635 lrp12,LOC107754924,LOC107714470,LOC107689529 coding downstream 911862 23967578 ~ 23985386 (+)
AMCG00002637 dpys coding downstream 941531 23997247 ~ 24007711 (+)
G124668 NA non-coding upstream 31824 23011435 ~ 23012000 (+)
G124667 NA non-coding upstream 40572 23002991 ~ 23003252 (+)
G124666 LOC106595597,LOC106595600,LOC106597717,LOC105016543 non-coding upstream 41592 23001788 ~ 23002232 (+)
G124658 NA non-coding upstream 52064 22990571 ~ 22991760 (+)
G124601 NA non-coding upstream 131145 22859923 ~ 22912679 (+)
G124687 NA non-coding downstream 162614 23218330 ~ 23276775 (+)
G124740 NA non-coding downstream 366257 23421973 ~ 23436320 (+)
G124750 NA non-coding downstream 550821 23606537 ~ 23606839 (+)
G124770 zfpm2 non-coding downstream 626297 23682013 ~ 23682226 (+)
G124774 NA non-coding downstream 773954 23829670 ~ 23829984 (+)
AMCG00002622 NA other upstream 53660 22987545 ~ 22990164 (+)
AMCG00002573 NA other upstream 2710794 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 3910257 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 3915877 19073693 ~ 19127947 (+)
G123989 NA other upstream 4205293 18832014 ~ 18838531 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 12408 23068124 ~ 23180043 (+)
G124689 NA other downstream 96932 23152648 ~ 23290535 (+)
G124769 NA other downstream 622219 23677935 ~ 23681385 (+)
G124863 NA other downstream 1366536 24422252 ~ 24422613 (+)
AMCG00002650 NA other downstream 1706168 24761884 ~ 24776815 (+)

Expression


Co-expression Network