AMCG00002612 (LOC103360969)


Basic Information

Item Value
gene id AMCG00002612
gene name LOC103360969
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22927289 ~ 22945921 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002612
ACAGATTAGTTATTCAGAGGAAAGAGTCGAAATCATGTAATTATTACCTGCTTCTTACGGCAATGGAAGGTGGATTAAACTACAATACCCATACGCCTCCTCTCACTGTTTACCTCCTTCGTCACTTCCGGTTTTACAGACACCCTAACTGAAGACTTCTTCGCTGTCTGTCTGAGTTTTTACTAAGCTTTCGTGAACTTTATTTGTGTGGATGATCACAATTCCTGTCATATTTGTACATTAGTTTAAGTTCAACGTAGGTTACGTTTCTATTGTGTTGCAATGCAGTTAACATTACTTTTAAATTTCCCGCTGCACTAGCCGCCTGGTTAACTGTATCATTTGGAGATAAATCGTTGGGAGAAACCCGAAGCTGCAAGTTGAATGCAGGTTGTTTAAGTACAGCTGCGAGATGCAGACCACCGATATAGGCACGAAGGAAACGGGGAAAATCTGGCATCGAAAGCCAACGCCTTCAAATGATGGggtCTTAGTCAACCTGATTCGCAGTGCAGCTGGCTATCATTCCAAGACCGTTCGATTTCTGCACGTTGCATTTGACACAACAGGAGACACTTTCCTGGCAGGAGACCACCATGGAAATCTCTATGGGTTTGACATCAGCAGAAACCGgtTCACACTTGTTCAGAAGACTGGTCAGGCATGCACTGCTTTGGCCTTCAACCTGCGAAGGAAAACAGAGTTCTTGGTGGCACTTGCAGACTACTCCATCAAGTGTTTTGATACGGACTCCAAGGAGCTAGTGAGCTGGATGAGAGGCCACGAGGGTGCTGTGTCTGCAATCTCCGTCCACGGCTCGGGGAGGTACGCCATCTCTACGTCTACAGACACAGCCCAGCTCTGGGACCTGGACACCTTCCAGAGGAAAAGGAAGCTAAACGTGCGCCAGTCAGTGGGGATACAAAAGgtgtTTTTCTTGCCCTTGAGCAACACCATCCTGAGCTGCTTTAAAGATGGTTCAATCTTTGCCTGGGAAAGCGACACCCTGTACTGCAAATATCAGCTGCCAGTGCCAGAGGACGGTCCTCGGCTGCATTATAAGGCATTTGCTGTCACTCGGGATGGGCGTAATTTGGTGGCTGGTGGAAAATCGAATTTGCTTCACCTCTGGTGCTTGGACAGCAAGCAGTTGCTGAGAGTCATTCAGATGCCACCCAAAGTGAGAACTGTGCGGCACCTGGAATTTCTACCCGACAGCTTTGATGGGGGATCAAGTCAGGTTCTTGGAGTGCTTAGTCAGGAGGGTATAATGCGGTTTATCAACATTCAGACGTGCAAGCTGATCTTTGACATCGGGACTCATGACGACGGCATCAGCTCAGCAGCAATCAGTCCAAATGGACACCATGTTGTAGCTGTGATGGAGAATGGCAGCCTGAACATATACAGTcccccccctcccctcgtGAAAGTGATTTCAGACATGGACAGGGCTACAGCTGCCAATCAGACGCTTTCCGGTCTGAAAATGAAGGTGAAGTCGGGACAAGTGCAGAGGCCTGTGAAGTCAGTGGCTGGCAAGGTCCAGACTCGAGTTCTGAGGCCCCCTGCTCACGCATCCCCAGAAGATAAAGAGAATGAATTGCCAGAGGGATTGAACAAGAAGAGACTGCAGGCTTTACTCAAGGGCTTTGGAGAATACCCGGCAAAATACAGGATGTTTATCTGGCGCTCCCTGCTTCACTTACCGGAGAACCACTCGGCCTTCAGCAGCCTGACTGACAAAGGGCTGCACTCGGCCTACCTGCGTCTCCATGACCGATACCCTATCAAGAGCCAGAAGCTGCAGCGGGTGCTTCAGAGggtGTTGTCGGCTCTGGCTCACTGGTCATCTATCTTCGGCGAGACGGAGTACCTCCCCCTGGTGGCGTTTCCATTCGTTAAACTGTTCCAGAACAACCAGCTCATCTGCTTTGAAGTGATTGCTACAGTTCTAAtgAACTGGTGCCAGCACTGGTTTGAATATTTTCCCAACCCTCCACTCAATATCCTGAGCATGGCGGAGAATGTTCTAGCACATCACGACAAGGACCTTCTCCAGCACTTGGTCAACTGTGAAGTAACATCACAGGTGTTGACGCGAGAGGAGTGGCTGAAGCTGTTCGACAACGTCTTCACCAACCACCCCGCGTTCCTGCTGATGTCTGTGGTGTCCTATGTCATCTGCTGCCGGGCTCCCCTCCTGCAGTGCACCCTGAAGGATGACTTTGAGTATTTCTTTCATCACCGCAATAACTTGGATATCAATGCCATGATCAAGGAGACATACCGGCTGATGGACAGCACTCCCACAGAAATCCACCCCCGGCGCATGCTGAGTGACTTTGAGCCCCTGACCAGGGGGCAGTACCCCGTCTTCAACAAGTACCCCACATTCATTGTCGAATACCAGTCACAGGAGCGTGAGAAGATTCGACAGCAGGAGATCGAGTATTTAAGGGAAAGGCAGATGGCCCAGGAACTGCGCTCGGAGGCGGTGCGGAGGCAGGCGGAGGACGAGGCATGGTTCAGACAACAGCAGTTGCTGCAGGAGGCTGAGGAGCAGAGAAGGAGGATcctgcaggaggaggagggcaaGCTGGCTGAGCAGAGAGTCAGGTTGGCTGCTATTAAACGAGAGCTGAAAGTGAAGGAACTGCATCTTCTTGATGCTGCCAGGAGTCGCTTTGTCAAATACCAGCAGGACCAGAAGAAAATGGAGCTCAGGAGGCTTGACGATGAGATCGACAGAAAGACATCTTTGCGAGATCAGGAAACGGCCATAGCACTGCAAGACATCGAGATTCGACAAATGGAGCTGGAGGCCCAGAGAAGGCTGTTTGAACAGCAACTGTtgaaagagcaggagagagtgACCCAGGAAGTAAAAGCTGAGGTGGATTCTCGCCACCGAAAGGCAGAGGCAGAAGAGCACACCTTCAAGAAAGTGCTCGAAAGGGACATGTGCCATGATTTGGAGACCAGAAAGGCGCTGGGGGGGTCCTGGGCCGAAGCCGATCAGCTGCGCATGGATGCGGACTGGCAGGCCGAGGTGCTGAGGCGACTGGAGCAGGCGGACGTGGAGAGGGAGCGGTGCCACCAGGAGCTGGCCCATCTGACCCGCGAAACCCATGCCAAAGAAGAGCAGCTCTTGCAGCTGATGAAAGAGGTGGAGGGCAAAAAGTGGGAGGATGTTGTGGAGAGGAGAGcccagctggaggaggagagacgGGCGGCTGCCTTGGCAGAGGCTCAAAGGAGAGCCTTCCTGGCCGCAGAGGCGGAAGAAGCCGAGCTACATGATGAAAGGCTACACAGGAGCCTGGAAGAGACGCATGAGAGACTCGGAGAGCTCAAGGTCAGATCTCCCTGCTCCACCAGAGGCCTTCTGCCAAAGCCTGACGCTGTGCCAACGGAGCCCAAAAACATCTGCCTCAACAACCTGTCCTCCAACGACTCCTCCACACACTTTTCTTTCGACAGGGGCCGCAGTGACCTTGAAAGCAAAGAGAGGCAGCTTATGATGGAAGTCCGAGGTCTTCGGCAGAAACTCGCCGCCCGCGCCAGGAACTCGGTCCCTCCGACCTATTCCTCCAGCTCTTAATGAGGCGCTTCGACCTTCAGATATCCGAGACCCCTTTCCCTCATGAAGCTCCAAACCGCAAACTCCACTCTCCTGTCACCAGCCAGAGATCGACTttgatgaatgtatttttccaacGACGCTAAACGGGGTTCCAGTGAAAGTACCggtatttttatacattttaaatgaataaggTGGCTTCCTGTCAAcgggattttaattaatttgtgctCAGATACAGAAAAAGAAGTTTATTATTGTATAGCTTGGCcgttttctctgtgtatttactCAGTGTCTGGTTTCAcgcttttaaaaatacagctgcCAGAAGATGGCACAGCCTGCCTCTCACAGGATCTTGCTGAGcactgtgtgttgggggggggggcaggaagcAGTTTGACAGCTTTTCACTCTTGCAGACCCTTTAACACTGTCAGGGCCTGCATTTGGAGCAGGTAGAACACAATCAGGTGGCAGAAATGCTCAAATACAGACGAGAGAGTCTACTATCGAAATTAGTCATTGTCTGCTTTACATTCTTATCAccatatgtgtatatgtattttttaatgtataattagtAATAGGTTTTCCAAATCCATCGaaaattgaattattcattttatgtgtattaatttatttgatcaaCAGtcttaactgtatatattgaGTTCTGCTATCCAGGAGCGAGTGCTGAATACATTGCTTTCATTGGTTGTCATTTAATTTACTAAATGATGTCAACTCAGGTTTTCTTGTCTTAGAATTGTATTAATAGTGAatcttggttttgtttcaaTGAATCACTTATAGATTATGTACAGAGTACTCTACAGCATTGACACCTGTATTTATTGCCAGAGACGTTAAATGGATTGAATGCCagaaccaaaaaacaaattaactgcaTCAACTGCATTTCCTAATAACACACTACTGACACTGGACTGTTTGGCATTTCAAATTTCTGTTAAtaaagcctgttttttttttactga

Function

NR:

description
PREDICTED: TBC1 domain family member 31-like

GO:      GO:0005097,GO:0032313

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002612 True 4590 mRNA 0.49 22 22927289 22945921

Neighbor

gene id symbol gene type direction distance location
AMCG00002618 NA coding upstream 20777 22904029 ~ 22906512 (+)
AMCG00002609 NA coding upstream 331001 22564822 ~ 22596288 (+)
AMCG00002607 NA coding upstream 379149 22484287 ~ 22548140 (+)
AMCG00002604 deptor,LOC107685573,LOC107673035 coding upstream 490482 22394260 ~ 22436807 (+)
AMCG00002600 NA coding upstream 622311 22301022 ~ 22304978 (+)
AMCG00002613 NA coding downstream 1282 22947203 ~ 22951828 (+)
AMCG00002621 NA coding downstream 50952 22996873 ~ 22999485 (+)
AMCG00002619 NA coding downstream 82715 23028636 ~ 23033585 (+)
AMCG00002624 NA coding downstream 97903 23043824 ~ 23055716 (+)
AMCG00002620 NA coding downstream 110861 23056782 ~ 23067800 (+)
G124601 NA non-coding upstream 14610 22859923 ~ 22912679 (+)
G124590 NA non-coding upstream 274347 22652726 ~ 22652942 (+)
G124534 NA non-coding upstream 488508 22436949 ~ 22438781 (+)
G124494 NA non-coding upstream 589331 22333949 ~ 22337958 (+)
G124408 tatdn1 non-coding upstream 1116468 21805620 ~ 21810821 (+)
G124658 NA non-coding downstream 44650 22990571 ~ 22991760 (+)
G124666 LOC106595597,LOC106595600,LOC106597717,LOC105016543 non-coding downstream 55867 23001788 ~ 23002232 (+)
G124667 NA non-coding downstream 57070 23002991 ~ 23003252 (+)
G124668 NA non-coding downstream 65514 23011435 ~ 23012000 (+)
G124687 NA non-coding downstream 272409 23218330 ~ 23276775 (+)
AMCG00002573 NA other upstream 2594259 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 3793722 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 3799342 19073693 ~ 19127947 (+)
G123989 NA other upstream 4088758 18832014 ~ 18838531 (+)
G123807 NA other upstream 4942559 17915436 ~ 17984730 (+)
AMCG00002622 NA other downstream 41624 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 122203 23068124 ~ 23180043 (+)
G124689 NA other downstream 206727 23152648 ~ 23290535 (+)
G124769 NA other downstream 732014 23677935 ~ 23681385 (+)
G124863 NA other downstream 1476331 24422252 ~ 24422613 (+)

Expression


Co-expression Network