G124534


Basic Information

Item Value
gene id G124534
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22436949 ~ 22438781 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU156090
acacattcacacaaagctatatataatataccgaaacatgtttatgtaatgtatatatacattatacaacaAGTTATAAAGTCATAAAACAAAGATGTTTACAAACACTTACATCATTCATGGGGGAACAAAACCATGGTGTTCTTTCATACacttcacatttaattttcaaccgacttcttcaaatgcatttctCTCTTGAGAATTATGAAGAACAGAATTTGCTGAAGTACAGTACTAgtcaatatgaaaaacaattcggggacacacaaaaaaacttgtTTGAAAGGAAAGCAGTCTGTAAGTCAGTGCATGCTTTTCATCAAGGACAGCTGTAAAGCGCACACAAACAGTTCTTaagctattttgttttcttaactgAACTGAATTCACGTTCACAGGTTTGTCTCTTTTCAGGGGACTTGCcaacaaatgacaaatgttgAACACCAGTTCTCATAATTGTGTGTCcaatatttgttgtattattatttttcccttaCATGCAACATTGCCTGTCATATCTCTCCCCTAATAATCTACTGTGATTGAATAAACCTGTCATTAAATATTTCATGTTCATTTGTGATTACAATGCTGCTGAGAATAAGGGTACTGATAatgctattgttttattttagagattttttttttttgggaaaGTGTCTATTGACAAGCAGTAAGAAAAAGCAGCAACAGCCTTACATACAGAAGAGCAACTGATGCTAACATGCACCTTGCTTGACTCAGTACAGGTATAAAACTATGCCTTAATACTGCTTTACATTACTGGTGTGCTGGCCAATATGTTCATTGCCAAAAGACACATTTCTTAAACTGTTACCAGGAAAGCTTCTAAGGTTTTTTGCCACAGCACCAAATTTGTCTCTACTTTTTCAACCTCCAAATAAAATCCAGGGAATTCTTTGAAGTTCAAGTGAAATATATTCACccgatttatttttctaaaatggcACTGTCTGTTACTATCCAGACAATTGGAGACTGGTTTTGCTCTGTGGCAATAAGCTTGacaatatttgtttagtttaaaactTTACGTTGCATaagaaaatgccttttttaaatgcaagaaaacCATGGACAATCAATGGTAATTTTTATGCTACACAATTAAtgtttgaaacaatgtttttttcttaaattaaattctgaCTGTGATTTTGCTCACCTGACACgttttttctgcttctgttttaGCTTTATTAAGTAAAAGATAAAAATCTTTAAACTTTAGCTTATCCTAAAAAGGGACTACTATACTTTTTCTGAGATGTTTGGGagtatacagtatgttaatatAGCACTTGAATTTTTAAAGCCATAACAGCTGACTACAAATGCAACTAAATTTCAAGATGATTGTCTTTGCCTTCCTTTAAATCAGGACAATGGAAGAGTGTGGGATGTACCAATCCACATTTTATAATGCAGAACAGATAGTATAGTTACATGTAAATCTACAGGCATTTTATTAAACTACTTAACTTAATTAAAcctggtttctttttttgcttaaAGGAACTACATCAACAAAAACGGCTGATTATGTTTAATTCAGTTGTGTTACTCAGGTGTTTCATAATCATTGTGCGATTACatttgtgtagtttttttttttctggtacaCACTTGTCTAGGTGTAATAAGATTACACTGCTCATTTTCATGACTGAAGAGTATATTGTAATAAATGGTTTTCATTACCTTATTTTCATGGTTAGTGGTAATACTTATTTGAGTGTGTCGTACGAAAGTTGAAACCTGGTGAATCAAGCACCACTTTCATTGAATCCTGAAGCTCGATGAAAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU156090 True 1833 lncRNA 0.33 1 22436949 22438781

Neighbor

gene id symbol gene type direction distance location
AMCG00002604 deptor,LOC107685573,LOC107673035 coding upstream 142 22394260 ~ 22436807 (+)
AMCG00002600 NA coding upstream 131971 22301022 ~ 22304978 (+)
AMCG00002601 NA coding upstream 167216 22265856 ~ 22269733 (+)
AMCG00002599 NA coding upstream 182209 22242277 ~ 22254740 (+)
AMCG00002598 NA coding upstream 280928 22150796 ~ 22156021 (+)
AMCG00002607 NA coding downstream 45506 22484287 ~ 22548140 (+)
AMCG00002609 NA coding downstream 126041 22564822 ~ 22596288 (+)
AMCG00002618 NA coding downstream 465248 22904029 ~ 22906512 (+)
AMCG00002612 LOC103360969 coding downstream 488508 22927289 ~ 22945921 (+)
AMCG00002613 NA coding downstream 508422 22947203 ~ 22951828 (+)
G124494 NA non-coding upstream 98991 22333949 ~ 22337958 (+)
G124408 tatdn1 non-coding upstream 626128 21805620 ~ 21810821 (+)
G124405 NA non-coding upstream 640992 21795315 ~ 21795957 (+)
G124403 NA non-coding upstream 641747 21794994 ~ 21795202 (+)
G124364 NA non-coding upstream 782224 21653782 ~ 21654725 (+)
G124590 NA non-coding downstream 213945 22652726 ~ 22652942 (+)
G124601 NA non-coding downstream 421142 22859923 ~ 22912679 (+)
G124658 NA non-coding downstream 551790 22990571 ~ 22991760 (+)
G124666 LOC106595597,LOC106595600,LOC106597717,LOC105016543 non-coding downstream 563007 23001788 ~ 23002232 (+)
G124667 NA non-coding downstream 564210 23002991 ~ 23003252 (+)
AMCG00002573 NA other upstream 2103919 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 3303382 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 3309002 19073693 ~ 19127947 (+)
G123989 NA other upstream 3598418 18832014 ~ 18838531 (+)
G123807 NA other upstream 4452219 17915436 ~ 17984730 (+)
AMCG00002622 NA other downstream 548764 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 629343 23068124 ~ 23180043 (+)
G124689 NA other downstream 713867 23152648 ~ 23290535 (+)
G124769 NA other downstream 1239154 23677935 ~ 23681385 (+)
G124863 NA other downstream 1983471 24422252 ~ 24422613 (+)

Expression


Co-expression Network