AMCG00002607


Basic Information

Item Value
gene id AMCG00002607
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22484287 ~ 22548140 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002607
GACCAGTTTGTCTGCAAGACTCCAGCTATCGCAGATATTGTGATACTGGTGGATGGCTCCTGGAGTATTGGCAGGATCAACTTTCGGCTTGTTCGAATGTTCTTGGAAAACCTGGTTAGTGCGTTCTCTGTGGGCTCCGATAAAACCCGAATCGGTCTTGCTTTGACTTATATTTTGGAGAACAGCTTTAAGTCTGAATCTGGGGCCAGGCCTGGTGTGCCCAAAATTGGTATCCTGATCACAGATGGAAAGTCCCAGGATGATGTCATTCCTCCAGCCAGAAGTCTTCAGGATGCTGGCATCGAACTGTTTGCTATTGGTGTGAAGAACGCTGATGAGAATGAGCTGAGATCCATTGCCTCGGACCCTGACGAGTCCCACGTCTACAATGTCGCTGACTTCAACATCATGAGCACCATTGTGGAAAGCCTTACTAAAACCGTTTGCGATCGCGTGGAAGAACAAGACAAGGAGATAAAAGGCGTGTCTGGCGGACAGACGTCTTTAGGAGCCCCTCAAAACCTGGAGACTTCAGAAGTAACGGCCAGAAGTTTCAGAGTGACCTGGACCCACGCCCCTGGTAAAGTGGAGAAATACCGTGTGGTCTACTACCCCACCAGAGGAGGCCAGCCAGATGAGGCTGTGGTTGATGGCAGTGAGAACTCAGTGGTGCTGCAGTACTTGAACTCCCTGACTGAGTATCAGATTGCAGTTTTTGCCGTGTACACCAGCTCTGCCAGTGAGGGGCTTAGAGGCAGTGAAACAACACTGGCCCTGCCCATGGTGAACGACCTGCAGCTGTATGATGTTACTCACAGCACCATGAGGGCCAGGTGGAAAGGTGTGGAGGGGGCCTCTGGTTACATGATCCTGTACGCCCCGCTGACAGAGGCGGACGCAGCGGATGAGAAAGAGGTGAAAGTCGTGGAGTCGGTGAATGATATAGAGCTGGAGGGTCTCTCCCCGGAAACAGAGTACACTGTGACAGTATATGCAATGTATGGCGAAGAAGCCAGTGATCCGATGACAAGTCAAGAAACGACatTGCCACTGAGCCCCCCCAGAAACCTGGAATTCTCTGAAGTGGGGCACAGTTCTGCCAGAATGACATGGGATGCAGCCTCCAAGAAAGTTCGAGGTTATCGAATCATGTATGTGAAGACGAATGGAGTGGAAGTTGGTCAAGTCACTACCCATATACTTAGGAACCTGACTTCCCTCACAGAGTACACGGTGGCCATTTTTGGCATATATGATGAAGGACAGTCTGAGCCACTGACAGGAAGTTTCACCACAAAGTCAGTACCACCCCCAATGGATCTGAAGACTAGTGAATTATCCACAAACAGCTTCAGAGTTAGATGGCGGCACTCTGCACCAGATATTGTCTTGTACAAGCTGTCCTGGACTCCCACGAGTGGTGGGGATACAAAAGAGgtacttttaaatgacaaatcagATTCCTACATCTTGGACGAGTTACGGCCATCGACGGAATATGAGGTGTCTCTCTCTGCGGTCTTCAGAGATGAAACGGAGAGCGATGCCGTGCTTGTGCTGGAAACAACGTTGGCAAGGACAACCACCATCGCCACTACAAcaactgcaacaacaacaccagTTGATCGCGATGGAGTGAGAAACTTGGTCATAGACGATGAAACCACCTTCAGCATGCAGGTGTCCTGGGAGCCACTGGGCCAGAATGTGCAGCAGTACAGAGTGTCCTACGTCAGTCTCAGAGGAGACCGGGCGGAAGAAGCGGTTCTGGTCCCTGGTAGGCAGAGCAGCCTCCTGTTACAGCCCCTCCTGTCAGACACCGAGTACAAGGTCACCGTCACTCCTGTCTACGCAGATGAAGACGGGAACAGCGTGTCAGACGTTGGCAGAACGTTGCCACTGTCTGCACCGAGGAACCTGCGAGTTTCTGAGGAATGGTACAATCGATTCCGCATCACATGGGACCCTCCCCCCTCACCCACCATGGGCTACAGAATTGTCTACCAACCAATCTCTgCCTCTGGACCTGGTCTGGAGACATTTGTGGGAGATGATGTCAACACCATGCTCATCCTGAATCTCCTCAGTGGCACCGAATACAGCGTCAAAGTCATTGCCTCCTACACAACGGGCTCCAGCGACGCCCTTTCAGGAAAGGCAAAGACATtGTACCTGGGAGTTAACAATCTGAACACGTACCAGGTTCGCATGACAAGCATGTGTGCACAATGGCAACCCCACCGGCAGGCAACTCTGTACAGAGTGGTCATTGAATCCCTCACTAatggacagacacagGAAGTGAGTCTTGGAGGCGGATCATCCAGACACTGTTTCTATGACCTCAAGCCAAACACCCAGTACAAAATCACAGTCTACGCGCAGCTCCATGACATGGAGGGACCGGCTGTCACAGTTATGGACAAAACATTTCCCACTGAACCACCCACGACTCCCCCGACTACGACACCTCTCCCCACCATCCCCCCTGCTAGAGAAGTGTGCAAAGCTGCCAAAGCAGATCTGGTCTTTTTAGTGGATGGGTCCTGGAGTATTGGAGACGATAACTTTCACAAAATCATCGGCTTCTTATACAGCACATCAGGTGCTCTGGACAAGATCGGGCCTGATGGCACTCAGGTTGCCATTGCTCAGTTCAGTGACGATGCCAGAACAGAATTCAAACTCAAAGCCATCAAGCACGTAAAAGACGCCATCTTCACAGCGGAGGCTGGCATGAGGCGGGGGATTCCCAAAGTCCTCGTTGTTTTGACTGACGGACGGTCCCAGGATGATGTCAACAAGGTTTCCAAAGAGATGCAGATGGAGGGTTACATTATTTTCGCAATTGGATTTGCCGATGCGGACTATGGCGAATTAGTGAACATTGCCAGCAAGCCCAGCGAGAGGCACGTGTTCTTTGTGGACGATTTAGATGCTTTCAAGAAAATAGAAGAACAACTGGTAACCTTTGTGTGTGAAGCTGCTTCTGCAActtgTCCATCTGTCCTAATGAGTGGCAACACCCTAGCAGGGTTTAGGATGATGGAGATGTTTGGTCTTATGGAGAACCAGTATGCTTCTGTTGAAGGAGTGTCTCTGGAGCCTGGAACTTTTAACAGCTTCCCCTGCTACAGACTACACAAGGATGCCCTCATCTCACAGCCAACTAAGTTCCTCCATCCTGAAGGCCTGCCCTCTGATTACACCATCTCTGTGCTCTTCCGCTTACTGCCTGAAACCCCAGAAGAGCCCTTTGCATTGTGGGAGATCCTTAACAAAGACAATGAGCCTCTCTTCCAGACTGTGACGTTTGAAGGTCCCGAGATCAGAAAGATTTTCCATGGGAGCTTTCACAAGCTGCATGTAGCCATCAGCAAGACTACGGCCAAAGCCGTTATTGACTGCAAAGTGGTGGGAGAGAAGCCCATAAATGCTGCAGGCAACATCACTGCTGATGGTGTGGAAATACTGGGCAGGATGGTGAGATCCAGAGGGAAGAGGGACAATTCTGCACCGTTCCAGTTGCAGATGTTTGACATCGTTTGCAGCACGTCGTGGGCAAGCAGGGATAAGTGCTGTGAGCTGCCGGGCTTGAGAAAGGAGGAAAACTGCCCAGCGATGCCACATGCTTGTACCTGCTCTCAGGACAGTAAAGGCCCCCCTGGCCCTGTGGGATCCCCGGGACCTCAAGGCCCCACAGGAGACATTGGTTTGCCAGGACCCCAGGGACCCCCCGGACCTCAAGGACCTAGTGGGCACTCCATTCAGGGCCCTCCGGGCTCAATtggagagaaaggggaaaaGGGAGAGAACGGTCCCCCAGGAACGCAGGGTGTTCCTGGATCTCCTGGGTCACCAGGGAGGGATGGCACACAGGGTCAAAGGggCCTTCCAGGCAAAGATGGACCACAGGGACAACAGGGACCCCCAGGACCAATTGGGACCCCCGGAGCTCCAGGTTCCCCAGGATCGAGTGGGCCCCCTGGCTCCCTGGGTGACCAGGGCCCACCTGGAGACATGCAGTCCCAAGCTGCTGTTCGTTCAATAGCTCGTCAAGTCTGTGAGCAGCTTATCCAGAGTCACATGGCCCGCTACAATTCCATCCTGAACCAGATCCCCAGTCAGCCTGCGTCTGTGCGAACGGTGCCTGGGCCCCCAGGAGAACCCGGGCGGCAGGGCTCCCCAGGGCCACAAGGAGAGCAGGGACCAGCGGGCAGGCCAGGATTCCCCGGTTCCAACGGGCAGCCTGGTAGACCAGGGGAGAGAGGATTCCCTggagaaaagggagagaaaggaaGCCAAGgACCCCCAGGCGAAGGGCGGACAGGCAGCCAGGGTTCACCAGGGAGACCGGGCAACCAGGGGACCCCAGGACGACCAGGAAGCCCTGGATCCACAGGCCCGGCCGGACCCCCTGGGTACTGCGACGCATCTACCTGCATGGGATATAACGTCGGAGGTGGATATGGGGACCCAACTGACCGAGACATTCCCGTAGTTCAATTACCTCCCAACTCCTACCAAACCTATGATCCCACCGACAATTACGAGGACGAGGAGGAACAGTACGCTGGGTATAGAGGCTACCCTCAGTACCCCGAGACCTCCTACCCAGCCCCTCGCCCAGTCCAGCCCGTGCCCGAGCCCTACCCCACGGACGATGCCATCGAAGTGAGATCCCCAGGAATCCACCGGGTTTCCCGCAGCCTCTCCAAACAGAAGAGTAAAACTGACAAACAGAAGAGGACACTGAAAGACTCG

Function

GO: NA

KEGG:

id description
K08133 COL14A; collagen type XIV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002607 True 4764 mRNA 0.53 40 22484287 22548140

Neighbor

gene id symbol gene type direction distance location
AMCG00002604 deptor,LOC107685573,LOC107673035 coding upstream 47480 22394260 ~ 22436807 (+)
AMCG00002600 NA coding upstream 179309 22301022 ~ 22304978 (+)
AMCG00002601 NA coding upstream 214554 22265856 ~ 22269733 (+)
AMCG00002599 NA coding upstream 229547 22242277 ~ 22254740 (+)
AMCG00002598 NA coding upstream 328266 22150796 ~ 22156021 (+)
AMCG00002609 NA coding downstream 16682 22564822 ~ 22596288 (+)
AMCG00002618 NA coding downstream 355889 22904029 ~ 22906512 (+)
AMCG00002612 LOC103360969 coding downstream 379149 22927289 ~ 22945921 (+)
AMCG00002613 NA coding downstream 399063 22947203 ~ 22951828 (+)
AMCG00002621 NA coding downstream 448733 22996873 ~ 22999485 (+)
G124534 NA non-coding upstream 45506 22436949 ~ 22438781 (+)
G124494 NA non-coding upstream 146329 22333949 ~ 22337958 (+)
G124408 tatdn1 non-coding upstream 673466 21805620 ~ 21810821 (+)
G124405 NA non-coding upstream 688330 21795315 ~ 21795957 (+)
G124403 NA non-coding upstream 689085 21794994 ~ 21795202 (+)
G124590 NA non-coding downstream 104586 22652726 ~ 22652942 (+)
G124601 NA non-coding downstream 311783 22859923 ~ 22912679 (+)
G124658 NA non-coding downstream 442431 22990571 ~ 22991760 (+)
G124666 LOC106595597,LOC106595600,LOC106597717,LOC105016543 non-coding downstream 453648 23001788 ~ 23002232 (+)
G124667 NA non-coding downstream 454851 23002991 ~ 23003252 (+)
AMCG00002573 NA other upstream 2151257 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 3350720 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 3356340 19073693 ~ 19127947 (+)
G123989 NA other upstream 3645756 18832014 ~ 18838531 (+)
G123807 NA other upstream 4499557 17915436 ~ 17984730 (+)
AMCG00002622 NA other downstream 439405 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 519984 23068124 ~ 23180043 (+)
G124689 NA other downstream 604508 23152648 ~ 23290535 (+)
G124769 NA other downstream 1129795 23677935 ~ 23681385 (+)
G124863 NA other downstream 1874112 24422252 ~ 24422613 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009794 col14a1a coding NC_007127.7 CM002900.2 14684916 ~ 15050842 (+)